Finemapr: S3 class Finemapr.

In variani/finemapr: R wrapper to fine-mappers

Description

S3 class Finemapr.

Usage

## S3 method for class 'Finemapr'
plot_zscore(
  x,
  locus = 1,
  label_size = getOption("finemapr_label_size"),
  selected,
  force = 20,
  color_main = "grey75",
  color_selected = "aquamarine4",
  color_credible = "dodgerblue4",
  color_missing = "brown",
  plot_missing = FALSE,
  ...
)

plot_ncausal(x, ...)

print.Finemapr(x, ...)

print.Finemapr(x, ...)

## S3 method for class 'Finemapr'
plot(x, ...)

## S3 method for class 'Finemapr'
plot_snp(
  x,
  lim_prob = c(0, 1.5),
  label_size = getOption("finemapr_label_size"),
  top_rank = getOption("top_rank"),
  ...
)

## S3 method for class 'Finemapr'
extract_credible_set(x, ...)

## S3 method for class 'Finemapr'
process_tab(x, tabs, ...)

## S3 method for class 'Finemapr'
process_ld(x, lds, ...)

Note

Colors: http://www.stat.columbia.edu/~tzheng/files/Rcolor.pdf

variani/finemapr documentation built on Dec. 12, 2020, 9:40 p.m.