meshSim: meshSim

In meshes: MeSH Enrichment and Semantic analyses

Description

semantic similarity between two MeSH term vectors

Usage

meshSim(meshID1, meshID2, measure = "Wang", semData)

Arguments

meshID1	MeSH term vector
meshID2	MeSH term vector
measure	one of "Wang", "Resnik", "Rel", "Jiang" and "Lin"
semData	annotation data for semantic measurement, output by meshdata function

Value

score matrix

Author(s)

Guangchuang Yu https://guangchuangyu.github.io

Examples

## hsamd <- meshdata("MeSH.Hsa.eg.db", category='A', computeIC=T, database="gendoo")
data(hsamd)
meshSim("D000009", "D009130", semData=hsamd, measure="Resnik")

Example output

Loading required package: DOSE

DOSE v3.2.0  For help: https://guangchuangyu.github.io/DOSE

If you use DOSE in published research, please cite:
Guangchuang Yu, Li-Gen Wang, Guang-Rong Yan, Qing-Yu He. DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis. Bioinformatics 2015, 31(4):608-609


Attaching package: 'meshes'

The following object is masked from 'package:DOSE':

    geneSim

Warning message:
Couldn't set synchronous mode: database is locked
Use `synchronous` = NULL to turn off this warning. 
[1] 0.2910261

meshes documentation built on Nov. 8, 2020, 4:58 p.m.