empirical_lambda: Estimate the dropout parameter
In mfa: Bayesian hierarchical mixture of factor analyzers for modelling genomic bifurcations
Description
Usage
Arguments
Value
Examples
Description
Estimate the dropout parameter
Usage
1
empirical_lambda(y, lower_limit = 0)
Arguments
y
A cell-by-gene expression matrix
lower_limit
The limit below which expression counts as 'dropout'
Value
The estimated lambda
Examples
1
2
synth <- create_synthetic(C = 20, G = 5, zero_negative = TRUE, model_dropout = TRUE)
lambda <- empirical_lambda(synth$X)
mfa documentation built on Nov. 8, 2020, 8:10 p.m.
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Description Usage Arguments Value Examples
Description
Estimate the dropout parameter
Usage
1 | empirical_lambda(y, lower_limit = 0)
|
Arguments
y |
A cell-by-gene expression matrix |
lower_limit |
The limit below which expression counts as 'dropout' |
Value
The estimated lambda
Examples
1 2 | synth <- create_synthetic(C = 20, G = 5, zero_negative = TRUE, model_dropout = TRUE)
lambda <- empirical_lambda(synth$X)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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