pdCompSymm: Positive-Definite Matrix with Compound Symmetry Structure

In nlme: Linear and Nonlinear Mixed Effects Models

Positive-Definite Matrix with Compound Symmetry Structure

Description

This function is a constructor for the pdCompSymm class, representing a positive-definite matrix with compound symmetry structure (constant diagonal and constant off-diagonal elements). The underlying matrix is represented by 2 unrestricted parameters. When value is numeric(0), an uninitialized pdMat object, a one-sided formula, or a vector of character strings, object is returned as an uninitialized pdCompSymm object (with just some of its attributes and its class defined) and needs to have its coefficients assigned later, generally using the coef or matrix replacement functions. If value is an initialized pdMat object, object will be constructed from as.matrix(value). Finally, if value is a numeric vector of length 2, it is assumed to represent the unrestricted coefficients of the underlying positive-definite matrix.

Usage

pdCompSymm(value, form, nam, data)

Arguments

value	an optional initialization value, which can be any of the following: a pdMat object, a positive-definite matrix, a one-sided linear formula (with variables separated by +), a vector of character strings, or a numeric vector of length 2. Defaults to numeric(0), corresponding to an uninitialized object.
form	an optional one-sided linear formula specifying the row/column names for the matrix represented by object. Because factors may be present in form, the formula needs to be evaluated on a data.frame to resolve the names it defines. This argument is ignored when value is a one-sided formula. Defaults to NULL.
nam	an optional vector of character strings specifying the row/column names for the matrix represented by object. It must have length equal to the dimension of the underlying positive-definite matrix and unreplicated elements. This argument is ignored when value is a vector of character strings. Defaults to NULL.
data	an optional data frame in which to evaluate the variables named in value and form. It is used to obtain the levels for factors, which affect the dimensions and the row/column names of the underlying matrix. If NULL, no attempt is made to obtain information on factors appearing in the formulas. Defaults to the parent frame from which the function was called.

Value

a pdCompSymm object representing a positive-definite matrix with compound symmetry structure, also inheriting from class pdMat.

Author(s)

José Pinheiro and Douglas Bates [e-mail]

References

Pinheiro, J.C., and Bates, D.M. (2000) "Mixed-Effects Models in S and S-PLUS", Springer, esp. p. 161.

See Also

as.matrix.pdMat, coef.pdMat, matrix<-.pdMat, pdClasses

Examples

pd1 <- pdCompSymm(diag(3) + 1, nam = c("A","B","C"))
pd1

nlme documentation built on Nov. 27, 2023, 5:09 p.m.