Description Usage Arguments Value Author(s) Examples
Produces a line plot showing the feature abundances across the fractions.
1 2 3 4 |
object |
An instance of class |
markers |
A |
fcol |
Feature meta-data label (fData column name) defining
the groups to be differentiated using different colours. If
|
mcol |
A |
pcol |
A |
alpha |
A numeric defining the alpha channel (transparency)
of the points, where |
type |
Character string defining the type of lines. For
example |
lty |
Vector of line types for the marker profiles. Default
is 1 (solid). See |
fractions |
A |
ylab |
y-axis label. Default is "Intensity". |
xlab |
x-axis label. Default is "Fractions". |
ylim |
A numeric vector of length 2, giving the y coordinates range. |
... |
Additional parameters passed to |
Used for its side effect of producing a feature distribution plot. Invisibly returns the data matrix.
Laurent Gatto
1 2 3 4 5 6 7 8 9 10 | library("pRolocdata")
data(tan2009r1)
j <- which(fData(tan2009r1)$markers == "mitochondrion")
i <- which(fData(tan2009r1)$PLSDA == "mitochondrion")
plotDist(tan2009r1[i, ], markers = featureNames(tan2009r1)[j])
plotDist(tan2009r1[i, ], markers = featureNames(tan2009r1)[j],
fractions = "Fractions")
## plot and colour all marker profiles
tanmrk <- markerMSnSet(tan2009r1)
plotDist(tanmrk, fcol = "markers")
|
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