penguins_na.rm: Size measurements for adult foraging penguins near Palmer...

In spinifex: Manual Tours, Manual Control of Dynamic Projections of Numeric Multivariate Data

Size measurements for adult foraging penguins near Palmer Station, Antarctica

Description

Includes measurements for penguin species, island in Palmer Archipelago, size (flipper length, body mass, bill dimensions), and sex.

Usage

penguins_na.rm

Format

A data frame with 333 rows and 4 numeric variables and 3 factor variables

bill_length_mm

a number denoting bill length (millimeters)

bill_depth_mm

a number denoting bill depth (millimeters)

flipper_length_mm

an integer denoting flipper length (millimeters)

body_mass_g

an integer denoting body mass (grams)

species

a factor denoting penguin species (Adelie, Chinstrap and Gentoo)

sex

a factor denoting penguin sex (female, male)

island

a factor denoting island in Palmer Archipelago, Antarctica (Biscoe, Dream or Torgersen)

Details

This is a cleaned subset of palmerpenguins::penguins.

Replicating this dataset:

require(palmerpenguins)
d <- palmerpenguins::penguins
d <- d[complete.cases(d), ] ## Remove missing, 2 obs of numeric and several in sex
d <- d[, c(3:6, 1, 7, 2)]   ## Numeric to front, group factors, remove year
penguins_na.rm <- as.data.frame(d) ## Remove {tibble} dependency
## save(penguins_na.rm, file = "./data/penguins_na.rm.rda")

Source

palmerpenguins R package. A. Horst, 2020. Palmer Archipelago (Antarctica) Penguin Data. https://CRAN.R-project.org/package=palmerpenguins

Adelie penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Adelie penguins (Pygoscelis adeliae) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative \Sexpr[results=rd]{tools:::Rd_expr_doi("10.6073/pasta/98b16d7d563f265cb52372c8ca99e60f")}

Gentoo penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Gentoo penguin (Pygoscelis papua) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 5. Environmental Data Initiative \Sexpr[results=rd]{tools:::Rd_expr_doi("10.6073/pasta/7fca67fb28d56ee2ffa3d9370ebda689")}

Chinstrap penguins: Palmer Station Antarctica LTER and K. Gorman. 2020. Structural size measurements and isotopic signatures of foraging among adult male and female Chinstrap penguin (Pygoscelis antarcticus) nesting along the Palmer Archipelago near Palmer Station, 2007-2009 ver 6. Environmental Data Initiative \Sexpr[results=rd]{tools:::Rd_expr_doi("10.6073/pasta/c14dfcfada8ea13a17536e73eb6fbe9e")}

Originally published in: Gorman KB, Williams TD, Fraser WR (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE 9(3): e90081. doi:10.1371/journal.pone.0090081

Examples

library(spinifex)
str(penguins_na.rm)
dat   <- scale_sd(penguins_na.rm[, 1:4])
clas1 <- penguins_na.rm$species
clas2 <- penguins_na.rm$sex

bas <- basis_pca(dat)
mv  <- manip_var_of(bas)
mt  <- manual_tour(bas, mv)

ggt <- ggtour(mt, dat, angle = .2) +
  proto_default(aes_args = list(color = clas1, shape = clas2))

animate_plotly(ggt)

spinifex documentation built on May 29, 2024, 1:23 a.m.