targets.as.df: Convert targets list to data.frame

In systemPipeR: systemPipeR: NGS workflow and report generation environment

Description

Convert list, which stores data from each target input file to data.frame object.

Usage

targets.as.df(x)

Arguments

x	An object of the class "list" that stores data from each target input file, as targets(WF).

Value

data.frame containing all the input file information.

Author(s)

Daniela Cassol and Thomas Girke

Examples

targets <- system.file("extdata", "targets.txt", package="systemPipeR")
dir_path <- system.file("extdata/cwl/hisat2/hisat2-se", package="systemPipeR")
WF <- loadWorkflow(targets=targets, wf_file="hisat2-mapping-se.cwl", 
                  input_file="hisat2-mapping-se.yml", dir_path=dir_path)
WF <- renderWF(WF, inputvars=c(FileName="_FASTQ_PATH1_", SampleName="_SampleName_"))
WF
targets.as.df(targets(WF))

systemPipeR documentation built on Jan. 26, 2021, 2 a.m.