h.summary: summary results from subset-search.

In ASSET: An R package for subset-based association analysis of heterogeneous traits and subtypes

Description

The function produces summarise results from subset-based association analysis.

Usage

h.summary(rlist, level = 0.05, digits = 3)

Arguments

rlist	List returned by h.traits or h.types
level	Level for confidence intervals. Default is 0.05 for 95% CI. The confidence intervals are obtained by inverting the corresponding multiple-testing adjusted p-values.
digits	Number of significant digits to retain in odds ratios and confidence intervals in the summary table

Details

Return data frames having as many rows as SNPs in the return list.

Value

A list of data frames, one for each of the methods specified the original call of the functions h.traits or h.types. Each row of a data frame corresponds to a SNP and the values include p-values for overall association (including component-wise p-values for two-sided search), names of phenotypes or disease subtypes included in the best-subset, summary regression coefficients (e.g. log-odds-ratio for case-control studies) representing strength of association of a SNP with the identified subset of traits/subtype and corresponding confidence intervals.

See Also

h.forestPlot, h.traits, h.types

ASSET documentation built on May 2, 2019, 5:46 p.m.