mice: mice dataset
In BGLR: Bayesian Generalized Linear Regression
Description
Usage
Format
Source
References
Description
The mice data comes from an experiment carried out to detect and locate QTLs for complex traits in a
mice population (Valdar et al. 2006a; 2006b). This data has already been analyzed for comparing genome-assisted
genetic evaluation methods (Legarra et al. 2008). The data file consists of 1814 individuals,
each genotyped for 10,346 polymorphic markers. The trait here
here is body mass index (BMI), and additional information about body weight, season, month and day.
Usage
1
Format
Matrix mice.A contains the pedigree.
The matrix mice.X contains the markes information and
mice.pheno contains phenotypical information.
Source
References
Legarra A., Robert-Granie, E. Manfredi, and J. M. Elsen, 2008 Performance of genomic selection in mice. Genetics 180:611-618.
Valdar, W., L. C. Solberg, D. Gauguier, S. Burnett, P. Klenerman et al., 2006a Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat. Genet. 38:879-887.
Valdar, W., L. C. Solberg, D. Gauguier, W. O. Cookson, J. N. P. Rawlis et al., 2006b Genetic and environmental effects on complex traits in mice. Genetics, 174:959-984.
BGLR documentation built on May 2, 2019, 6:53 p.m.
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Description Usage Format Source References
Description
The mice data comes from an experiment carried out to detect and locate QTLs for complex traits in a mice population (Valdar et al. 2006a; 2006b). This data has already been analyzed for comparing genome-assisted genetic evaluation methods (Legarra et al. 2008). The data file consists of 1814 individuals, each genotyped for 10,346 polymorphic markers. The trait here here is body mass index (BMI), and additional information about body weight, season, month and day.
Usage
1 |
Format
Matrix mice.A contains the pedigree. The matrix mice.X contains the markes information and mice.pheno contains phenotypical information.
Source
References
Legarra A., Robert-Granie, E. Manfredi, and J. M. Elsen, 2008 Performance of genomic selection in mice. Genetics 180:611-618.
Valdar, W., L. C. Solberg, D. Gauguier, S. Burnett, P. Klenerman et al., 2006a Genome-wide genetic association of complex traits in heterogeneous stock mice. Nat. Genet. 38:879-887.
Valdar, W., L. C. Solberg, D. Gauguier, W. O. Cookson, J. N. P. Rawlis et al., 2006b Genetic and environmental effects on complex traits in mice. Genetics, 174:959-984.
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