BIOMOD: Ensemble platform for species distribution modeling

Functions for species distribution modeling, calibration and evaluation, ensemble of models.

AuthorWilfried Thuiller, Damien Georges and Robin Engler
Date of publication2012-09-12 07:30:56
MaintainerWilfried Thuiller <wilfried.thuiller@ujf-grenoble.fr>
LicenseGPL-2
Version1.1-7.04

View on R-Forge

Man pages

BinaryTransformation: Transforming data into a binary format

Biomod.Manual: Calling the Manual

BIOMOD-package: Species/climate modelling functions

Biomod.RangeSize: Analysis of the range size changes

Biomod.Turnover: Estimation of the Turnover for a given location and...

CoorXY: Coordinates for plotting the BIOMOD example maps

CreateProjMatrix: Creating a dataframe compiling the wanted projections

CurrentPred: Produce binary and filtered data within Biomod

CutOff.Optimised: Treshold estimation minimising difference between sensitivity...

Ensemble.Forecasting: Make ensemble forecasts for future projection of species'...

FilteringTransformation: Transforming data into a filtered format

Future1: Future data for making projections

Initial.State: Initialise the datasets for usage in Biomod

KappaRepet: Maximising Kappa and True Skill Statistics for incremental...

KappaStat: Kappa Statistic for predictive accuracy evaluation

level.plot: Plotting 2-dimensional data

LoadModels: Loading models produced by BIOMOD

LoadProj: Loading predictions and projections produced by BIOMOD

Migration: Using migration dynamics in species modelling

Models: Running the species-climate envelop models available in...

multiple.plot: Plot and compare prediction maps within BIOMOD

PredictionBestModel: Optimising the predictions using the evaluation scores for...

ProbDensFunc: Probability Density Function

Projection: Making projection with BIOMOD

ProjectionBestModel: Optimising the projections using the evaluation scores

pseudo.abs: Selecting pseudo-absences

response.plot: Analysis of the response curves of a model within Biomod

Sp.Env: Species and Environmental data for species-climate modelling...

sre: Surface Range Envelope

TSS.Stat: True Skill Statistic for predictive accuracy evaluation

Functions

BinaryTransformation Man page
BIOMOD Man page
Biomod.Manual Man page
BIOMOD-package Man page
Biomod.RangeSize Man page
Biomod.RangeSize.raster Man page
Biomod.Turnover Man page
Biomod.Turnover.raster Man page
CoorXY Man page
CreateProjMatrix Man page
CurrentPred Man page
CutOff.Optimised Man page
Ensemble.Forecasting Man page
Ensemble.Forecasting.raster Man page
FilteringTransformation Man page
Future1 Man page
Initial.State Man page
KappaRepet Man page
KappaStat Man page
level.plot Man page
LoadModels Man page
LoadProj Man page
Migration Man page
Models Man page
multiple.plot Man page
PredictionBestModel Man page
ProbDensFunc Man page
Projection Man page
ProjectionBestModel Man page
Projection.raster Man page
pseudo.abs Man page
response.plot Man page
Sp.Env Man page
sre Man page
TSS.Stat Man page

Files

BIOMOD
BIOMOD/NAMESPACE
BIOMOD/data
BIOMOD/data/CoorXY.rda
BIOMOD/data/DATA100SP.RData
BIOMOD/data/Sp.Env.rda
BIOMOD/data/Future1.rda
BIOMOD/R
BIOMOD/R/LoadProj.R BIOMOD/R/somers2.R BIOMOD/R/level.plot.R BIOMOD/R/PredictionBestModel.R BIOMOD/R/KappaStat.R BIOMOD/R/Projection.R BIOMOD/R/pseudo.abs.R BIOMOD/R/sre.R BIOMOD/R/Ensemble.Forecasting.raster2.R BIOMOD/R/Ensemble.Forecasting.raster.R BIOMOD/R/CreateProjMatrix.R BIOMOD/R/CVnnet.R BIOMOD/R/Initial.State.R BIOMOD/R/TSS.Stat.R BIOMOD/R/KappaSRE.R BIOMOD/R/printcp.R BIOMOD/R/Models.R BIOMOD/R/BIOMOD-internal.R BIOMOD/R/ProbDensFunc.R BIOMOD/R/Dispersal.Limit.R BIOMOD/R/BinaryTransformation.R BIOMOD/R/SampleMat2.R BIOMOD/R/Biomod.Turnover.raster.R BIOMOD/R/CutOff.Optimised.R BIOMOD/R/scope.R BIOMOD/R/LoadRequiredPackages.R BIOMOD/R/Biomod.RangeSize.raster.R BIOMOD/R/Migration.R BIOMOD/R/Rescaler4.R BIOMOD/R/Biomod.Models.R BIOMOD/R/testnull.R BIOMOD/R/Biomod.Turnover.R BIOMOD/R/functionkeep.R BIOMOD/R/scopeExpSyst.R BIOMOD/R/LoadModels.R BIOMOD/R/CurrentPred.R BIOMOD/R/ProjectionBestModel.R BIOMOD/R/Projection.raster.R BIOMOD/R/response.plot.R
BIOMOD/R/Biomod.Manual.r
BIOMOD/R/FilteringTransformation.R BIOMOD/R/Biomod.RangeSize.R BIOMOD/R/Ensemble.Forecasting.R
BIOMOD/R/multiple.plot.r
BIOMOD/R/KappaRepet.R
BIOMOD/inst
BIOMOD/inst/doc
BIOMOD/inst/doc/Biomod_Practical_Building_Models.pdf
BIOMOD/inst/doc/BIOMOD-R User Functions.R
BIOMOD/inst/doc/BiomodTutorial.pdf
BIOMOD/inst/doc/Biomod_Presentation_Manual.pdf
BIOMOD/inst/doc/Biomod Manual.pdf
BIOMOD/DESCRIPTION
BIOMOD/man
BIOMOD/man/TSS.Stat.Rd BIOMOD/man/multiple.plot.Rd BIOMOD/man/Models.Rd BIOMOD/man/Ensemble.Forecasting.Rd BIOMOD/man/response.plot.Rd BIOMOD/man/Biomod.Manual.Rd BIOMOD/man/ProjectionBestModel.Rd BIOMOD/man/pseudo.abs.Rd BIOMOD/man/level.plot.Rd BIOMOD/man/BIOMOD-package.Rd BIOMOD/man/Biomod.Turnover.Rd BIOMOD/man/BinaryTransformation.Rd BIOMOD/man/Initial.State.Rd BIOMOD/man/Projection.Rd BIOMOD/man/sre.Rd BIOMOD/man/CurrentPred.Rd BIOMOD/man/CreateProjMatrix.Rd BIOMOD/man/KappaRepet.Rd BIOMOD/man/CoorXY.Rd BIOMOD/man/Sp.Env.Rd BIOMOD/man/LoadProj.Rd BIOMOD/man/PredictionBestModel.Rd BIOMOD/man/CutOff.Optimised.Rd BIOMOD/man/Migration.Rd BIOMOD/man/Future1.Rd BIOMOD/man/ProbDensFunc.Rd BIOMOD/man/KappaStat.Rd BIOMOD/man/FilteringTransformation.Rd BIOMOD/man/Biomod.RangeSize.Rd BIOMOD/man/LoadModels.Rd

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