BIOMOD: Ensemble platform for species distribution modeling
Version 1.1-7.04

Functions for species distribution modeling, calibration and evaluation, ensemble of models.

Browse man pages Browse package API and functions Browse package files

AuthorWilfried Thuiller, Damien Georges and Robin Engler
Date of publication2012-09-12 07:30:56
MaintainerWilfried Thuiller <wilfried.thuiller@ujf-grenoble.fr>
LicenseGPL-2
Version1.1-7.04
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("BIOMOD", repos="http://R-Forge.R-project.org")

Man pages

BinaryTransformation: Transforming data into a binary format
Biomod.Manual: Calling the Manual
BIOMOD-package: Species/climate modelling functions
Biomod.RangeSize: Analysis of the range size changes
Biomod.Turnover: Estimation of the Turnover for a given location and...
CoorXY: Coordinates for plotting the BIOMOD example maps
CreateProjMatrix: Creating a dataframe compiling the wanted projections
CurrentPred: Produce binary and filtered data within Biomod
CutOff.Optimised: Treshold estimation minimising difference between sensitivity...
Ensemble.Forecasting: Make ensemble forecasts for future projection of species'...
FilteringTransformation: Transforming data into a filtered format
Future1: Future data for making projections
Initial.State: Initialise the datasets for usage in Biomod
KappaRepet: Maximising Kappa and True Skill Statistics for incremental...
KappaStat: Kappa Statistic for predictive accuracy evaluation
level.plot: Plotting 2-dimensional data
LoadModels: Loading models produced by BIOMOD
LoadProj: Loading predictions and projections produced by BIOMOD
Migration: Using migration dynamics in species modelling
Models: Running the species-climate envelop models available in...
multiple.plot: Plot and compare prediction maps within BIOMOD
PredictionBestModel: Optimising the predictions using the evaluation scores for...
ProbDensFunc: Probability Density Function
Projection: Making projection with BIOMOD
ProjectionBestModel: Optimising the projections using the evaluation scores
pseudo.abs: Selecting pseudo-absences
response.plot: Analysis of the response curves of a model within Biomod
Sp.Env: Species and Environmental data for species-climate modelling...
sre: Surface Range Envelope
TSS.Stat: True Skill Statistic for predictive accuracy evaluation

Functions

BIOMOD Man page
BIOMOD-package Man page
BinaryTransformation Man page
Biomod.Manual Man page Source code
Biomod.Models Source code
Biomod.RangeSize Man page
Biomod.RangeSize.raster Man page
Biomod.Turnover Man page
Biomod.Turnover.raster Man page
CV.nnet Source code
CoorXY Man page
CreateProjMatrix Man page
CurrentPred Man page
CutOff.Optimised Man page
Ensemble.Forecasting Man page
Ensemble.Forecasting.raster Man page
FilteringTransformation Man page
Future1 Man page
Initial.State Man page
KappaRepet Man page
KappaStat Man page
LoadModels Man page
LoadProj Man page
Migration Man page
Models Man page
PredictionBestModel Man page
ProbDensFunc Man page
Projection Man page
Projection.raster Man page
ProjectionBestModel Man page
Sp.Env Man page
TSS.Stat Man page
check.Ensemble.Forecasting.raster Source code
check.params.sre Source code
level.plot Man page
multiple.plot Man page
oadRequiredPackages Source code
pseudo.abs Man page
response.plot Man page
somers2 Source code
sre Man page Source code
sre.projection Source code
testnull Source code

Files

NAMESPACE
data
data/CoorXY.rda
data/DATA100SP.RData
data/Sp.Env.rda
data/Future1.rda
R
R/LoadProj.R
R/somers2.R
R/level.plot.R
R/PredictionBestModel.R
R/KappaStat.R
R/Projection.R
R/pseudo.abs.R
R/sre.R
R/Ensemble.Forecasting.raster2.R
R/Ensemble.Forecasting.raster.R
R/CreateProjMatrix.R
R/CVnnet.R
R/Initial.State.R
R/TSS.Stat.R
R/KappaSRE.R
R/printcp.R
R/Models.R
R/BIOMOD-internal.R
R/ProbDensFunc.R
R/Dispersal.Limit.R
R/BinaryTransformation.R
R/SampleMat2.R
R/Biomod.Turnover.raster.R
R/CutOff.Optimised.R
R/scope.R
R/LoadRequiredPackages.R
R/Biomod.RangeSize.raster.R
R/Migration.R
R/Rescaler4.R
R/Biomod.Models.R
R/testnull.R
R/Biomod.Turnover.R
R/functionkeep.R
R/scopeExpSyst.R
R/LoadModels.R
R/CurrentPred.R
R/ProjectionBestModel.R
R/Projection.raster.R
R/response.plot.R
R/Biomod.Manual.r
R/FilteringTransformation.R
R/Biomod.RangeSize.R
R/Ensemble.Forecasting.R
R/multiple.plot.r
R/KappaRepet.R
inst
inst/doc
inst/doc/Biomod_Practical_Building_Models.pdf
inst/doc/BIOMOD-R User Functions.R
inst/doc/BiomodTutorial.pdf
inst/doc/Biomod_Presentation_Manual.pdf
inst/doc/Biomod Manual.pdf
DESCRIPTION
man
man/TSS.Stat.Rd
man/multiple.plot.Rd
man/Models.Rd
man/Ensemble.Forecasting.Rd
man/response.plot.Rd
man/Biomod.Manual.Rd
man/ProjectionBestModel.Rd
man/pseudo.abs.Rd
man/level.plot.Rd
man/BIOMOD-package.Rd
man/Biomod.Turnover.Rd
man/BinaryTransformation.Rd
man/Initial.State.Rd
man/Projection.Rd
man/sre.Rd
man/CurrentPred.Rd
man/CreateProjMatrix.Rd
man/KappaRepet.Rd
man/CoorXY.Rd
man/Sp.Env.Rd
man/LoadProj.Rd
man/PredictionBestModel.Rd
man/CutOff.Optimised.Rd
man/Migration.Rd
man/Future1.Rd
man/ProbDensFunc.Rd
man/KappaStat.Rd
man/FilteringTransformation.Rd
man/Biomod.RangeSize.Rd
man/LoadModels.Rd
BIOMOD documentation built on May 21, 2017, 4 a.m.