BIOMOD: Ensemble platform for species distribution modeling

Functions for species distribution modeling, calibration and evaluation, ensemble of models.

AuthorWilfried Thuiller, Damien Georges and Robin Engler
Date of publication2012-09-12 07:30:56
MaintainerWilfried Thuiller <wilfried.thuiller@ujf-grenoble.fr>
LicenseGPL-2
Version1.1-7.04

View on R-Forge

Man pages

BinaryTransformation: Transforming data into a binary format

Biomod.Manual: Calling the Manual

BIOMOD-package: Species/climate modelling functions

Biomod.RangeSize: Analysis of the range size changes

Biomod.Turnover: Estimation of the Turnover for a given location and...

CoorXY: Coordinates for plotting the BIOMOD example maps

CreateProjMatrix: Creating a dataframe compiling the wanted projections

CurrentPred: Produce binary and filtered data within Biomod

CutOff.Optimised: Treshold estimation minimising difference between sensitivity...

Ensemble.Forecasting: Make ensemble forecasts for future projection of species'...

FilteringTransformation: Transforming data into a filtered format

Future1: Future data for making projections

Initial.State: Initialise the datasets for usage in Biomod

KappaRepet: Maximising Kappa and True Skill Statistics for incremental...

KappaStat: Kappa Statistic for predictive accuracy evaluation

level.plot: Plotting 2-dimensional data

LoadModels: Loading models produced by BIOMOD

LoadProj: Loading predictions and projections produced by BIOMOD

Migration: Using migration dynamics in species modelling

Models: Running the species-climate envelop models available in...

multiple.plot: Plot and compare prediction maps within BIOMOD

PredictionBestModel: Optimising the predictions using the evaluation scores for...

ProbDensFunc: Probability Density Function

Projection: Making projection with BIOMOD

ProjectionBestModel: Optimising the projections using the evaluation scores

pseudo.abs: Selecting pseudo-absences

response.plot: Analysis of the response curves of a model within Biomod

Sp.Env: Species and Environmental data for species-climate modelling...

sre: Surface Range Envelope

TSS.Stat: True Skill Statistic for predictive accuracy evaluation

Files in this package

BIOMOD
BIOMOD/NAMESPACE
BIOMOD/data
BIOMOD/data/CoorXY.rda
BIOMOD/data/DATA100SP.RData
BIOMOD/data/Sp.Env.rda
BIOMOD/data/Future1.rda
BIOMOD/R
BIOMOD/R/LoadProj.R BIOMOD/R/somers2.R BIOMOD/R/level.plot.R BIOMOD/R/PredictionBestModel.R BIOMOD/R/KappaStat.R BIOMOD/R/Projection.R BIOMOD/R/pseudo.abs.R BIOMOD/R/sre.R BIOMOD/R/Ensemble.Forecasting.raster2.R BIOMOD/R/Ensemble.Forecasting.raster.R BIOMOD/R/CreateProjMatrix.R BIOMOD/R/CVnnet.R BIOMOD/R/Initial.State.R BIOMOD/R/TSS.Stat.R BIOMOD/R/KappaSRE.R BIOMOD/R/printcp.R BIOMOD/R/Models.R BIOMOD/R/BIOMOD-internal.R BIOMOD/R/ProbDensFunc.R BIOMOD/R/Dispersal.Limit.R BIOMOD/R/BinaryTransformation.R BIOMOD/R/SampleMat2.R BIOMOD/R/Biomod.Turnover.raster.R BIOMOD/R/CutOff.Optimised.R BIOMOD/R/scope.R BIOMOD/R/LoadRequiredPackages.R BIOMOD/R/Biomod.RangeSize.raster.R BIOMOD/R/Migration.R BIOMOD/R/Rescaler4.R BIOMOD/R/Biomod.Models.R BIOMOD/R/testnull.R BIOMOD/R/Biomod.Turnover.R BIOMOD/R/functionkeep.R BIOMOD/R/scopeExpSyst.R BIOMOD/R/LoadModels.R BIOMOD/R/CurrentPred.R BIOMOD/R/ProjectionBestModel.R BIOMOD/R/Projection.raster.R BIOMOD/R/response.plot.R
BIOMOD/R/Biomod.Manual.r
BIOMOD/R/FilteringTransformation.R BIOMOD/R/Biomod.RangeSize.R BIOMOD/R/Ensemble.Forecasting.R
BIOMOD/R/multiple.plot.r
BIOMOD/R/KappaRepet.R
BIOMOD/inst
BIOMOD/inst/doc
BIOMOD/inst/doc/Biomod_Practical_Building_Models.pdf
BIOMOD/inst/doc/BIOMOD-R User Functions.R
BIOMOD/inst/doc/BiomodTutorial.pdf
BIOMOD/inst/doc/Biomod_Presentation_Manual.pdf
BIOMOD/inst/doc/Biomod Manual.pdf
BIOMOD/DESCRIPTION
BIOMOD/man
BIOMOD/man/TSS.Stat.Rd BIOMOD/man/multiple.plot.Rd BIOMOD/man/Models.Rd BIOMOD/man/Ensemble.Forecasting.Rd BIOMOD/man/response.plot.Rd BIOMOD/man/Biomod.Manual.Rd BIOMOD/man/ProjectionBestModel.Rd BIOMOD/man/pseudo.abs.Rd BIOMOD/man/level.plot.Rd BIOMOD/man/BIOMOD-package.Rd BIOMOD/man/Biomod.Turnover.Rd BIOMOD/man/BinaryTransformation.Rd BIOMOD/man/Initial.State.Rd BIOMOD/man/Projection.Rd BIOMOD/man/sre.Rd BIOMOD/man/CurrentPred.Rd BIOMOD/man/CreateProjMatrix.Rd BIOMOD/man/KappaRepet.Rd BIOMOD/man/CoorXY.Rd BIOMOD/man/Sp.Env.Rd BIOMOD/man/LoadProj.Rd BIOMOD/man/PredictionBestModel.Rd BIOMOD/man/CutOff.Optimised.Rd BIOMOD/man/Migration.Rd BIOMOD/man/Future1.Rd BIOMOD/man/ProbDensFunc.Rd BIOMOD/man/KappaStat.Rd BIOMOD/man/FilteringTransformation.Rd BIOMOD/man/Biomod.RangeSize.Rd BIOMOD/man/LoadModels.Rd

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