LoadProj: Loading predictions and projections produced by BIOMOD

In BIOMOD: Ensemble platform for species distribution modeling

Description

The function will load all the wanted data from the hardrive to R's memory for any further usage.

Usage

LoadProj(Sp=1, Bin=FALSE, Filt=FALSE, which.pred="pred", raster=FALSE)

Arguments

Sp	a vector giving the species for which you want the models to be loaded. Numbers are wanted, not names. Typing 'all' selects all the species modelled.
Bin	Logical. If they exist, the binary datasets will be loaded in R.
Filt	Logical. If they exist, the filtered datasets will be loaded in R.
which.pred	a vector giving the names of the prediction/projection used in Projection() for which you want the data to be loaded. Names are wanted. Type "pred" for the predictions on the original data.
raster	Logical. Define if the projection wanted has been done with rasters.

Author(s)

Wilfried Thuiller, Bruno Lafourcade

See Also

Models, help

Examples

## Not run: 
data(Sp.Env)
data(CoorXY)

#This command is necessary for the run of BIOMOD as a new dataframe is produced for the Models function
Initial.State(Response=Sp.Env[,11:18], Explanatory=Sp.Env[,4:10], 
IndependentResponse=NULL, IndependentExplanatory=NULL)

#Here are done 2 PA runs and 2 repetitions for each run. This will hence take several minutes.
Models(GLM = FALSE, TypeGLM = "quad", Test = "AIC", CTA = TRUE, CV.tree = 50, ANN = TRUE, CV.ann = 2, 
   NbRunEval = 2, DataSplit = 80, Roc=TRUE, Optimized.Threshold.Roc=TRUE, Kappa=TRUE, TSS=TRUE, VarImport=5,
   NbRepPA=0, strategy="circles", coor=CoorXY, distance=2, nb.absences=1000)

Projection(Proj = Sp.Env[, 4:10], Proj.name="Current", GLM=TRUE, CTA=TRUE, ANN=TRUE, BinKappa=TRUE, FiltKappa=TRUE, repetition.models=TRUE)

#Render Future projections under climate change scenario
data(Future1)
Projection(Proj = Future1[,4:10], Proj.name="Future1", GLM=TRUE, CTA=TRUE, ANN=TRUE, BinKappa=TRUE, FiltKappa=TRUE, repetition.models=TRUE)

LoadProj(Sp='all', which.pred=c("pred", "Current", "Future1")) 

## End(Not run)

BIOMOD documentation built on May 2, 2019, 6:48 p.m.