CSFA: Connectivity Scores with Factor Analysis

Applies Factor Analysis methodology to microarray data in order to derive connectivity scores between compounds. The package also contains an implementation of the Connectivity Score algorithm by Zhang and Gant.

AuthorEwoud De Troyer
Date of publication2016-09-19 12:53:22
MaintainerEwoud De Troyer <ewoud.detroyer@uhasselt.be>
LicenseGPL-3
Version0.91

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Files in this package

CSFA/DESCRIPTION
CSFA/NAMESPACE
CSFA/R
CSFA/R/CSFA.R CSFA/R/CScompare.R CSFA/R/analyse_functions.R CSFA/R/extra.R CSFA/R/fabia_functions.R CSFA/R/method_structure.R CSFA/R/permutation_functions.R CSFA/R/zhang_functions.R
CSFA/build
CSFA/build/vignette.rds
CSFA/data
CSFA/data/dataSIM.RData
CSFA/data/datalist
CSFA/inst
CSFA/inst/doc
CSFA/inst/doc/CSFA.Rnw
CSFA/inst/doc/CSFA.pdf
CSFA/man
CSFA/man/CSFA.Rd CSFA/man/CSanalysis-matrix-matrix-CSfabia-method.Rd CSFA/man/CSanalysis-matrix-matrix-CSmfa-method.Rd CSFA/man/CSanalysis-matrix-matrix-CSpca-method.Rd CSFA/man/CSanalysis-matrix-matrix-CSsmfa-method.Rd CSFA/man/CSanalysis-matrix-matrix-CSzhang-method.Rd CSFA/man/CSanalysis-matrix-matrix-character-method.Rd CSFA/man/CSanalysis.Rd CSFA/man/CScompare.Rd CSFA/man/CSlabelscompare.Rd CSFA/man/CSpermute.Rd CSFA/man/CSresult-class.Rd CSFA/man/dataSIM.Rd
CSFA/vignettes
CSFA/vignettes/CSFA.Rnw
CSFA/vignettes/asa.bst
CSFA/vignettes/connectivityRef.bib
CSFA/vignettes/figure
CSFA/vignettes/figure/CScompare-1.pdf
CSFA/vignettes/figure/CScompare-2.pdf
CSFA/vignettes/figure/CScompare-3.pdf
CSFA/vignettes/figure/CScompare-4.pdf
CSFA/vignettes/figure/CScompare-5.pdf
CSFA/vignettes/figure/CSpermuteplots-1.pdf
CSFA/vignettes/figure/CSpermuteplots-2.pdf
CSFA/vignettes/figure/CSpermuteplots-3.pdf
CSFA/vignettes/figure/CSpermuteplots2-1.pdf
CSFA/vignettes/figure/CSpermuteplots2-2.pdf
CSFA/vignettes/figure/CSpermuteplots2-3.pdf
CSFA/vignettes/figure/FABIA-1.pdf
CSFA/vignettes/figure/FABIA-2.pdf
CSFA/vignettes/figure/FABIA-3.pdf
CSFA/vignettes/figure/MFA-1.pdf
CSFA/vignettes/figure/MFA-2.pdf
CSFA/vignettes/figure/MFA-3.pdf
CSFA/vignettes/figure/MFA-4.pdf
CSFA/vignettes/figure/MFA2-1.pdf
CSFA/vignettes/figure/MFA3-1.pdf
CSFA/vignettes/figure/ZG-1.pdf
CSFA/vignettes/figure/data_heatmap-1.png
CSFA/vignettes/perm_data
CSFA/vignettes/perm_data/out_MFA.RData
CSFA/vignettes/perm_data/out_ZG.RData

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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