CSresult-class: An S4 class in which the results of the Connectivity Scores...
In CSFA: Connectivity Scores with Factor Analysis
Description
An S4 class in which the results of the Connectivity Scores by Factor Analysis are stored.
Slots
typeA character string containing the analysis type.
CSList of any number of lists (depending on how many components were selected) which contain the connectivity loadings and ranking scores for the query (and reference loadings). If permutation was applied, will also contain p-values.
GSDataframe containing the gene scores.
extraList which contains CSRank_Full (contains all intermediate values while calculating the CS Ranking Score), Object (contains the complete original FA or Zhang result) and samplefactorlabels (contains thresholded labels based on the factor loadings, see plot which=9).
permutation.objectContains permuted data, CS for permuted data and a dataframe with the p-values (only for MFA and Zhang).
callList object containing the original call of CSanalysis as well as the parameters for the chosen method.
CSFA documentation built on May 2, 2019, 5:56 p.m.
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Description
An S4 class in which the results of the Connectivity Scores by Factor Analysis are stored.
Slots
typeA character string containing the analysis type.
CSList of any number of lists (depending on how many components were selected) which contain the connectivity loadings and ranking scores for the query (and reference loadings). If permutation was applied, will also contain p-values.
GSDataframe containing the gene scores.
extraList which contains
CSRank_Full(contains all intermediate values while calculating the CS Ranking Score),Object(contains the complete original FA or Zhang result) andsamplefactorlabels(contains thresholded labels based on the factor loadings, see plotwhich=9).permutation.objectContains permuted data, CS for permuted data and a dataframe with the p-values (only for MFA and Zhang).
callList object containing the original call of
CSanalysisas well as the parameters for the chosen method.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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