EMLasso: Fit (logistic) LASSO when there is missing data in the predictors

Fit (logistic) LASSO when there is missing data in the predictors/covariates

AuthorNick Sabbe <nick.sabbe@ugent.be>
Date of publication2013-06-16 13:30:06
MaintainerNick Sabbe <nick.sabbe@ugent.be>
LicenseGPL (>= 2)
Version2.0.9

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Man pages

checkConvergence.glmnet: Check whether convergence has occurred in the zeroness of...

collectImputationModels: Collect data from a model, needed for multiple imputation...

convergenceDiagnostics: Diagnose convergence of EMLasso.lognet objects

crossValidate: Crossvalidate a model

EMLasso: Fit EMLasso to a complete dataset, creating a GLoMo for each...

EMLasso.1l: Fit EMLasso for 1 lambda

EMLasso.1l.param: Collect parameters to EMLasso.1l into one list

EMLassoFromDir: Get EMLasso from the save files in a folder

EMLasso-package: EM (logistic) LASSO

findReasonableLambdaHelper: Function to run on a dataset with not too much missing data...

fit.glmnet: Tailormade weighted fitting of logistic glmnet

fit.lognet: Tailormade weighted fitting of logistic glmnet

fit.logreg: Fit logistic regression by using logistic LASSO with lambda=0

getMinMaxPosLikeGlmnet: Find a region of interest in a set of lambdas given criteria...

imputeDs2FitDs: Reusable information to convert an imputed dataset to fitting...

lognetProbabilityReusable: Function to help calculate predicted probability of a lognet...

marginalCompleter: Wrapper to complete a dataset based on (univariate) marginal...

outcomeModelValidationReusables: Create reusable part of validation (for rejection sampling)

plotCoefConvergence: Plot coefficient evolution of EMLasso.lognet objects

postProcessEMLasso: Postprocess EMLasso (e.g. add extra members or change class)

postProcessEMLasso1l: Postprocess EMLasso for 1 lambda result (e.g. add extra...

predictorModelSamplingReusables: Create reusable part of prediction for repeated sampling

predictProb: predict probabilities

retrieveLambdas: Retrieve lambdas

sampleConditional: Complete a dataset conditional on a model and the outcomes

setDebugmodeEMLasso: Set tracing of all calls on/off

simplyValidate: Validate a model (to its original data)

thresHolding: Simple threshold selection for some sets of variables...

validateFunction.lognet: validation function for use in...

Files in this package

EMLasso/DESCRIPTION
EMLasso/NAMESPACE
EMLasso/R
EMLasso/R/EMLasso-package.R EMLasso/R/EMLasso.1l.R EMLasso/R/EMLasso.1l.param.R EMLasso/R/EMLasso.R EMLasso/R/EMLassoFromDir.R EMLasso/R/checkConvergence.glmnet.R EMLasso/R/collectImputationModels.R EMLasso/R/convergenceDiagnostics.R EMLasso/R/crossValidate.R EMLasso/R/findReasonableLambdaHelper.R EMLasso/R/fit.glmnet.R EMLasso/R/fit.lognet.R EMLasso/R/fit.logreg.R EMLasso/R/getMinMaxPosLikeGlmnet.R EMLasso/R/imputeDs2FitDs.R EMLasso/R/lognetProbabilityReusable.R EMLasso/R/marginalCompleter.R EMLasso/R/outcomeModelValidationReusables.R EMLasso/R/plotCoefConvergence.R EMLasso/R/postProcessEMLasso.R EMLasso/R/postProcessEMLasso1l.R EMLasso/R/predictProb.R EMLasso/R/predictorModelSamplingReusables.R EMLasso/R/retrieveLambdas.R EMLasso/R/sampleConditional.R EMLasso/R/setDebugmodeEMLasso.R EMLasso/R/simplyValidate.R EMLasso/R/thresHolding.R EMLasso/R/validateFunction.lognet.R
EMLasso/man
EMLasso/man/EMLasso-package.Rd EMLasso/man/EMLasso.1l.Rd EMLasso/man/EMLasso.1l.param.Rd EMLasso/man/EMLasso.Rd EMLasso/man/EMLassoFromDir.Rd EMLasso/man/checkConvergence.glmnet.Rd EMLasso/man/collectImputationModels.Rd EMLasso/man/convergenceDiagnostics.Rd EMLasso/man/crossValidate.Rd EMLasso/man/findReasonableLambdaHelper.Rd EMLasso/man/fit.glmnet.Rd EMLasso/man/fit.lognet.Rd EMLasso/man/fit.logreg.Rd EMLasso/man/getMinMaxPosLikeGlmnet.Rd EMLasso/man/imputeDs2FitDs.Rd EMLasso/man/lognetProbabilityReusable.Rd EMLasso/man/marginalCompleter.Rd EMLasso/man/outcomeModelValidationReusables.Rd EMLasso/man/plotCoefConvergence.Rd EMLasso/man/postProcessEMLasso.Rd EMLasso/man/postProcessEMLasso1l.Rd EMLasso/man/predictProb.Rd EMLasso/man/predictorModelSamplingReusables.Rd EMLasso/man/retrieveLambdas.Rd EMLasso/man/sampleConditional.Rd EMLasso/man/setDebugmodeEMLasso.Rd EMLasso/man/simplyValidate.Rd EMLasso/man/thresHolding.Rd EMLasso/man/validateFunction.lognet.Rd

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