EMLasso: Fit (logistic) LASSO when there is missing data in the predictors

Fit (logistic) LASSO when there is missing data in the predictors/covariates

Author
Nick Sabbe <nick.sabbe@ugent.be>
Date of publication
2013-06-16 13:30:06
Maintainer
Nick Sabbe <nick.sabbe@ugent.be>
License
GPL (>= 2)
Version
2.0.9

View on R-Forge

Man pages

checkConvergence.glmnet
Check whether convergence has occurred in the zeroness of...
collectImputationModels
Collect data from a model, needed for multiple imputation...
convergenceDiagnostics
Diagnose convergence of EMLasso.lognet objects
crossValidate
Crossvalidate a model
EMLasso
Fit EMLasso to a complete dataset, creating a GLoMo for each...
EMLasso.1l
Fit EMLasso for 1 lambda
EMLasso.1l.param
Collect parameters to EMLasso.1l into one list
EMLassoFromDir
Get EMLasso from the save files in a folder
EMLasso-package
EM (logistic) LASSO
findReasonableLambdaHelper
Function to run on a dataset with not too much missing data...
fit.glmnet
Tailormade weighted fitting of logistic glmnet
fit.lognet
Tailormade weighted fitting of logistic glmnet
fit.logreg
Fit logistic regression by using logistic LASSO with lambda=0
getMinMaxPosLikeGlmnet
Find a region of interest in a set of lambdas given criteria...
imputeDs2FitDs
Reusable information to convert an imputed dataset to fitting...
lognetProbabilityReusable
Function to help calculate predicted probability of a lognet...
marginalCompleter
Wrapper to complete a dataset based on (univariate) marginal...
outcomeModelValidationReusables
Create reusable part of validation (for rejection sampling)
plotCoefConvergence
Plot coefficient evolution of EMLasso.lognet objects
postProcessEMLasso
Postprocess EMLasso (e.g. add extra members or change class)
postProcessEMLasso1l
Postprocess EMLasso for 1 lambda result (e.g. add extra...
predictorModelSamplingReusables
Create reusable part of prediction for repeated sampling
predictProb
predict probabilities
retrieveLambdas
Retrieve lambdas
sampleConditional
Complete a dataset conditional on a model and the outcomes
setDebugmodeEMLasso
Set tracing of all calls on/off
simplyValidate
Validate a model (to its original data)
thresHolding
Simple threshold selection for some sets of variables...
validateFunction.lognet
validation function for use in...

Files in this package

EMLasso/DESCRIPTION
EMLasso/NAMESPACE
EMLasso/R
EMLasso/R/EMLasso-package.R
EMLasso/R/EMLasso.1l.R
EMLasso/R/EMLasso.1l.param.R
EMLasso/R/EMLasso.R
EMLasso/R/EMLassoFromDir.R
EMLasso/R/checkConvergence.glmnet.R
EMLasso/R/collectImputationModels.R
EMLasso/R/convergenceDiagnostics.R
EMLasso/R/crossValidate.R
EMLasso/R/findReasonableLambdaHelper.R
EMLasso/R/fit.glmnet.R
EMLasso/R/fit.lognet.R
EMLasso/R/fit.logreg.R
EMLasso/R/getMinMaxPosLikeGlmnet.R
EMLasso/R/imputeDs2FitDs.R
EMLasso/R/lognetProbabilityReusable.R
EMLasso/R/marginalCompleter.R
EMLasso/R/outcomeModelValidationReusables.R
EMLasso/R/plotCoefConvergence.R
EMLasso/R/postProcessEMLasso.R
EMLasso/R/postProcessEMLasso1l.R
EMLasso/R/predictProb.R
EMLasso/R/predictorModelSamplingReusables.R
EMLasso/R/retrieveLambdas.R
EMLasso/R/sampleConditional.R
EMLasso/R/setDebugmodeEMLasso.R
EMLasso/R/simplyValidate.R
EMLasso/R/thresHolding.R
EMLasso/R/validateFunction.lognet.R
EMLasso/man
EMLasso/man/EMLasso-package.Rd
EMLasso/man/EMLasso.1l.Rd
EMLasso/man/EMLasso.1l.param.Rd
EMLasso/man/EMLasso.Rd
EMLasso/man/EMLassoFromDir.Rd
EMLasso/man/checkConvergence.glmnet.Rd
EMLasso/man/collectImputationModels.Rd
EMLasso/man/convergenceDiagnostics.Rd
EMLasso/man/crossValidate.Rd
EMLasso/man/findReasonableLambdaHelper.Rd
EMLasso/man/fit.glmnet.Rd
EMLasso/man/fit.lognet.Rd
EMLasso/man/fit.logreg.Rd
EMLasso/man/getMinMaxPosLikeGlmnet.Rd
EMLasso/man/imputeDs2FitDs.Rd
EMLasso/man/lognetProbabilityReusable.Rd
EMLasso/man/marginalCompleter.Rd
EMLasso/man/outcomeModelValidationReusables.Rd
EMLasso/man/plotCoefConvergence.Rd
EMLasso/man/postProcessEMLasso.Rd
EMLasso/man/postProcessEMLasso1l.Rd
EMLasso/man/predictProb.Rd
EMLasso/man/predictorModelSamplingReusables.Rd
EMLasso/man/retrieveLambdas.Rd
EMLasso/man/sampleConditional.Rd
EMLasso/man/setDebugmodeEMLasso.Rd
EMLasso/man/simplyValidate.Rd
EMLasso/man/thresHolding.Rd
EMLasso/man/validateFunction.lognet.Rd