FLAssess: Generic classes and methods for stock assessment models

A generic set of classes for stock assessment models are provided here. Individual assessment packages should extend the basic classes.

Author
Laurie T. Kell <laurie.kell@iccat.int>
Date of publication
2012-09-10 12:39:31
Maintainer
Finlay Scott <finlay.scott@cefas.co.uk> ; Robert Scott <robert.scott@jrc.ec.europa.eu>
License
GPL 2.0
Version
2.5.0

View on R-Forge

Man pages

assess-methods
Call an stock assessment model
data
FLAssess dataset
FLAssess-class
FLAssess class and methods
FLAssess.retro-class
Class FLAssess.retro
FLSepVPA.control-class
Control class for FLSepVPA
no.discards-methods
Sets catch data if no discards
plotFLAssess-methods
Plot method for FLAssess class
project
projection method for FLStock objects
projectControl
control object for the project method for FLStock objects
retro
Retrospective stock assessment in FLR
SepVPA-methods
Separable Virtual Population Analysis in FLR
stf-methods
Projection preparation for FLR
VPA-methods
Virtual Population Analysis in FLR
Z
Calculates total mortality

Files in this package

FLAssess
FLAssess/data
FLAssess/data/nhke.RData
FLAssess/data/namhke.RData
FLAssess/data/alb.RData
FLAssess/data/rocklob.RData
FLAssess/R
FLAssess/R/VPA.R
FLAssess/R/FLSP.R
FLAssess/R/SepVPA.R
FLAssess/R/projectControl.R
FLAssess/R/deprecated.R
FLAssess/R/handyfuncs.R
FLAssess/R/methodsFLAssess.R
FLAssess/R/zzz.R
FLAssess/R/classFLAssess.R
FLAssess/R/project.R
FLAssess/R/accessors.R
FLAssess/R/stf.R
FLAssess/NAMESPACE
FLAssess/tests
FLAssess/tests/VPA.R
FLAssess/tests/FLSP.R
FLAssess/tests/FLAssess.R
FLAssess/tests/sepVPA.R
FLAssess/tests/project.R
FLAssess/DESCRIPTION
FLAssess/man
FLAssess/man/SepVPA-methods.Rd
FLAssess/man/retro.Rd
FLAssess/man/FLAssess.retro-class.Rd
FLAssess/man/FLSepVPA.control-class.Rd
FLAssess/man/FLAssess-class.Rd
FLAssess/man/no.discards-methods.Rd
FLAssess/man/VPA-methods.Rd
FLAssess/man/data.Rd
FLAssess/man/projectControl.Rd
FLAssess/man/project.Rd
FLAssess/man/assess-methods.Rd
FLAssess/man/stf-methods.Rd
FLAssess/man/plotFLAssess-methods.Rd
FLAssess/man/Z.Rd
FLAssess/src
FLAssess/src/Makevars
FLAssess/src/FLSP.cpp
FLAssess/src/Makevars.win
FLAssess/src/FLVPA.cpp
FLAssess/src/FLVPA.hpp
FLAssess/demo
FLAssess/demo/FLSP.R
FLAssess/demo/00Index