FME: A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis

Provides functions to help in fitting models to data, to perform Monte Carlo, sensitivity and identifiability analysis. It is intended to work with models be written as a set of differential equations that are solved either by an integration routine from package 'deSolve', or a steady-state solver from package 'rootSolve'. However, the methods can also be used with other types of functions.

AuthorKarline Soetaert <karline.soetaert@nioz.nl>, Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Date of publication2016-09-08 10:09:45
MaintainerKarline Soetaert <karline.soetaert@nioz.nl>
LicenseGPL (>= 2)
Version1.3.5

View on R-Forge

Files in this package

FME/.Rinstignore
FME/DESCRIPTION
FME/NAMESPACE
FME/R
FME/R/Grid.R FME/R/Latinhyper.R FME/R/Norm.R FME/R/Unif.R FME/R/collin.R FME/R/cross2long.R FME/R/gaussianWeights.R FME/R/modCRL.R FME/R/modCost.R FME/R/modFit.R FME/R/modMCMC.R FME/R/obsplot.R FME/R/pseudoOptim.R FME/R/sensFun.R FME/R/sensRange.R FME/R/ultilities.R
FME/build
FME/build/vignette.rds
FME/inst
FME/inst/CITATION
FME/inst/doc
FME/inst/doc/FME.R
FME/inst/doc/FME.Rnw
FME/inst/doc/FME.pdf
FME/inst/doc/FMEdyna.R
FME/inst/doc/FMEdyna.Rnw
FME/inst/doc/FMEdyna.pdf
FME/inst/doc/FMEmcmc.R
FME/inst/doc/FMEmcmc.Rnw
FME/inst/doc/FMEmcmc.pdf
FME/inst/doc/FMEother.R
FME/inst/doc/FMEother.Rnw
FME/inst/doc/FMEother.pdf
FME/inst/doc/FMEsteady.R
FME/inst/doc/FMEsteady.Rnw
FME/inst/doc/FMEsteady.pdf
FME/inst/doc/examples
FME/inst/doc/examples/ABrun.R
FME/inst/doc/examples/BODO2_FME.R
FME/inst/doc/examples/Logist.R
FME/inst/doc/examples/Monod.R
FME/inst/doc/examples/O2profile_FME.R
FME/inst/doc/examples/Omexdia_FME.R
FME/inst/doc/examples/bact_FME.R
FME/inst/doc/examples/banana.R
FME/inst/doc/examples/ccl4rmodel_FME.R
FME/inst/doc/examples/modFit_with_simecol.R
FME/man
FME/man/FME.Rd FME/man/Grid.Rd FME/man/Latinhyper.Rd FME/man/Norm.Rd FME/man/Unif.Rd FME/man/collin.Rd FME/man/cross2long.Rd FME/man/gaussianWeights.Rd FME/man/modCRL.Rd FME/man/modCost.Rd FME/man/modFit.Rd FME/man/modMCMC.Rd FME/man/obsplot.Rd FME/man/pseudoOptim.Rd FME/man/sensFun.Rd FME/man/sensRange.Rd
FME/src
FME/src/mod.f
FME/vignettes
FME/vignettes/FME-HIV.pdf
FME/vignettes/FME.Rnw
FME/vignettes/FMEdyna.Rnw
FME/vignettes/FMEmcmc.Rnw
FME/vignettes/FMEother.Rnw
FME/vignettes/FMEsteady.Rnw
FME/vignettes/mcmc.Rdata
FME/vignettes/vignettes.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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