GDS: Genome-Wide Differential Splicing Detection

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Detection of alternative splicing within a mixed model framework.

Author
Marijke Van Moerbeke and Geert-Jan Bex
Date of publication
2015-09-04 12:55:57
Maintainer
Marijke Van Moerbeke <marijkevanmoerbeke@uhasselt.be>
License
GPL-3
Version
0.0.1

View on R-Forge

Man pages

ASExons
"ASExons"
CreateOutput
"CreateOutput"
DataProcessing
DataProcessing
ExonTesting
"ExonTesting"
FilterInformativeGenes
"FilterInformativeGenes"
FIRMAScores
"FIRMAScores"
GDS
Genome-wide Differential Splicing in a mixed model framework.
GDSFunction
"GDSFunction"
GDSFunction_ClusterVersion
"GDS_ClusterVersion"
gdsmodel_intern
"gdsmodel_intern"
inigds
"inigds"
PivotTransformData
"PivotTransformation"
PlotFunction
"PlotFunction"
Search
"Search"
SpliceIndex
"SpliceIndex"

Files in this package

GDS/DESCRIPTION
GDS/NAMESPACE
GDS/R
GDS/R/Functions.R
GDS/R/GDS.R
GDS/build
GDS/build/vignette.rds
GDS/inst
GDS/inst/doc
GDS/inst/doc/ASExons.R
GDS/inst/doc/ASExons.pbs
GDS/inst/doc/CreateOutput.R
GDS/inst/doc/CreateOutput.pbs
GDS/inst/doc/DataProcessing.R
GDS/inst/doc/DataProcessing.pbs
GDS/inst/doc/ExonTesting.R
GDS/inst/doc/ExonTesting.pbs
GDS/inst/doc/FIRMAScores.R
GDS/inst/doc/FIRMAScores.pbs
GDS/inst/doc/GDSFunction_ClusterVersion.R
GDS/inst/doc/GDSFunction_ClusterVersion.pbs
GDS/inst/doc/GDS_Vignette.R
GDS/inst/doc/GDS_Vignette.Rnw
GDS/inst/doc/GDS_Vignette.pdf
GDS/inst/doc/Line_Indexer.pbs
GDS/inst/doc/Line_Indexer.py
GDS/inst/doc/SpliceIndex.R
GDS/inst/doc/SpliceIndex.pbs
GDS/inst/doc/geneID_minus5.csv
GDS/man
GDS/man/ASExons.Rd
GDS/man/CreateOutput.Rd
GDS/man/DataProcessing.Rd
GDS/man/ExonTesting.Rd
GDS/man/FIRMAScores.Rd
GDS/man/FilterInformativeGenes.Rd
GDS/man/GDS.Rd
GDS/man/GDSFunction.Rd
GDS/man/GDSFunction_ClusterVersion.Rd
GDS/man/PivotTransformData.Rd
GDS/man/PlotFunction.Rd
GDS/man/Search.Rd
GDS/man/SpliceIndex.Rd
GDS/man/gdsmodel_intern.Rd
GDS/man/inigds.Rd
GDS/vignettes
GDS/vignettes/BVSPermbib.bib
GDS/vignettes/DataProcessing_Folders.png
GDS/vignettes/GDS_Vignette.Rnw
GDS/vignettes/GDS_Vignette.tex.tex
GDS/vignettes/TissueData_DEGene_ASExon.pdf
GDS/vignettes/TissueData_DEGene_ASExon_ArrayScores.pdf
GDS/vignettes/TissueData_DEGene_ASExon_ArrayScoresDensity.pdf
GDS/vignettes/TissueData_DEGene_ASExon_FIRMAScores.pdf
GDS/vignettes/asa.bst