GDS: Genome-Wide Differential Splicing Detection
Version 0.0.1

Detection of alternative splicing within a mixed model framework.

Browse man pages Browse package API and functions Browse package files

AuthorMarijke Van Moerbeke and Geert-Jan Bex
Date of publication2015-09-04 12:55:57
MaintainerMarijke Van Moerbeke <marijkevanmoerbeke@uhasselt.be>
LicenseGPL-3
Version0.0.1
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("GDS", repos="http://R-Forge.R-project.org")

Man pages

ASExons: "ASExons"
CreateOutput: "CreateOutput"
DataProcessing: DataProcessing
ExonTesting: "ExonTesting"
FilterInformativeGenes: "FilterInformativeGenes"
FIRMAScores: "FIRMAScores"
GDS: Genome-wide Differential Splicing in a mixed model framework.
GDSFunction: "GDSFunction"
GDSFunction_ClusterVersion: "GDS_ClusterVersion"
gdsmodel_intern: "gdsmodel_intern"
inigds: "inigds"
PivotTransformData: "PivotTransformation"
PlotFunction: "PlotFunction"
Search: "Search"
SpliceIndex: "SpliceIndex"

Functions

ASExons Man page Source code
CreateOutput Man page Source code
DataProcessing Man page Source code
ExonTesting Man page Source code
FIRMAScores Man page Source code
FilterInformativeGenes Man page Source code
GDS Man page
GDS-package Man page
GDSFunction Man page Source code
GDSFunction_ClusterVersion Man page Source code
PivotTransformData Man page Source code
PlotFunction Man page Source code
Search Man page Source code
SpliceIndex Man page Source code
gdsmodel_intern Man page Source code
inigds Man page Source code

Files

DESCRIPTION
NAMESPACE
R
R/Functions.R
R/GDS.R
build
build/vignette.rds
inst
inst/doc
inst/doc/ASExons.R
inst/doc/ASExons.pbs
inst/doc/CreateOutput.R
inst/doc/CreateOutput.pbs
inst/doc/DataProcessing.R
inst/doc/DataProcessing.pbs
inst/doc/ExonTesting.R
inst/doc/ExonTesting.pbs
inst/doc/FIRMAScores.R
inst/doc/FIRMAScores.pbs
inst/doc/GDSFunction_ClusterVersion.R
inst/doc/GDSFunction_ClusterVersion.pbs
inst/doc/GDS_Vignette.R
inst/doc/GDS_Vignette.Rnw
inst/doc/GDS_Vignette.pdf
inst/doc/Line_Indexer.pbs
inst/doc/Line_Indexer.py
inst/doc/SpliceIndex.R
inst/doc/SpliceIndex.pbs
inst/doc/geneID_minus5.csv
man
man/ASExons.Rd
man/CreateOutput.Rd
man/DataProcessing.Rd
man/ExonTesting.Rd
man/FIRMAScores.Rd
man/FilterInformativeGenes.Rd
man/GDS.Rd
man/GDSFunction.Rd
man/GDSFunction_ClusterVersion.Rd
man/PivotTransformData.Rd
man/PlotFunction.Rd
man/Search.Rd
man/SpliceIndex.Rd
man/gdsmodel_intern.Rd
man/inigds.Rd
vignettes
vignettes/BVSPermbib.bib
vignettes/DataProcessing_Folders.png
vignettes/GDS_Vignette.Rnw
vignettes/GDS_Vignette.tex.tex
vignettes/TissueData_DEGene_ASExon.pdf
vignettes/TissueData_DEGene_ASExon_ArrayScores.pdf
vignettes/TissueData_DEGene_ASExon_ArrayScoresDensity.pdf
vignettes/TissueData_DEGene_ASExon_FIRMAScores.pdf
vignettes/asa.bst
GDS documentation built on May 21, 2017, 3:39 a.m.