PlotFunction: "PlotFunction"
In GDS: Genome-Wide Differential Splicing Detection

Description Usage Arguments

The PlotFunction produces three plots concerning a specific exon and its corresponding gene.

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PlotFunction(GeneID = NULL, ExonID = NULL, Data, GDS_Output,
  GeneLevelData = NULL, ExonLevelData = NULL, FIRMA_Data = NULL, groups,
  plottype = "new", location)

`GeneID`	The gene ID of the gene of interest.
`ExonID`	The exon ID of the exon of interest.
`Data`	The processed data as returned by DataProcessing. This is were the observed probe intensities will be retrieved.
`GDS_Output`	The output of the GDS model. This is were the array scores will be retrieved.
`GeneLevelData`	The gene level summarized data to retrieve the gene level values.
`ExonLevelData`	The exon level summarized data to retrieve the exon level values.
`FIRMA_Data`	The output of the FIRMA model to retrieve the FIRMA scores of the samples.
`groups`	The groups of interest in the data.
`plottype`	Should be one of "pdf","new" or "sweave". If "pdf", a location should be provided in "location" and the figure is saved there. If "new" a new graphic device is opened and if "sweave", the figure is made compatible to appear in a sweave or knitr document, i.e. no new device is opened and the plot appears in the current device or document.
`location`	If plottype is "pdf", a location should be provided in "location" and the figure is saved here. the location should include te name of the plot.