HTSDiff: Differential Analysis of RNA-Seq Data with Poisson Mixture Models

A Poisson mixture model is implemented to identify differentially expressed genes from RNA-seq data.

Author
Andrea Rau, Marie-Laure Martin-Magniette, Cathy Maugis-Rabusseau
Date of publication
2015-01-18 22:05:02
Maintainer
Andrea Rau <andrea.rau@jouy.inra.fr>
License
GPL (>=3)
Version
1.0.6

View on R-Forge

Man pages

HTSDiff
Differential analysis of RNA-seq data using a Poisson mixture...
HTSDiff-package
Differential Analysis of RNA-Seq Data with Poisson Mixture...
initialDataset
RNA-seq data from Arabidopsis thaliana to be used to generate...
nullModelLogLike
Calculation of loglikelihood for null model in differential...
syntheticData
Generate synthetic data with a pre-specified number or...

Files in this package

HTSDiff/DESCRIPTION
HTSDiff/NAMESPACE
HTSDiff/R
HTSDiff/R/HTSDiff.R
HTSDiff/R/nullModelLogLike.R
HTSDiff/R/syntheticData.R
HTSDiff/R/zzz.R
HTSDiff/build
HTSDiff/build/vignette.rds
HTSDiff/data
HTSDiff/data/initialDataset.txt.gz
HTSDiff/inst
HTSDiff/inst/CITATION
HTSDiff/inst/NEWS
HTSDiff/inst/doc
HTSDiff/inst/doc/HTSDiff.R
HTSDiff/inst/doc/HTSDiff.Rnw
HTSDiff/inst/doc/HTSDiff.pdf
HTSDiff/man
HTSDiff/man/HTSDiff-package.Rd
HTSDiff/man/HTSDiff.Rd
HTSDiff/man/initialDataset.Rd
HTSDiff/man/nullModelLogLike.Rd
HTSDiff/man/syntheticData.Rd
HTSDiff/vignettes
HTSDiff/vignettes/HTSDiff.Rnw
HTSDiff/vignettes/HTSDiff.bib
HTSDiff/vignettes/inconsolata.sty
HTSDiff/vignettes/whbiocvignette.sty
HTSDiff/vignettes/zi4.sty