ids_phased: Example MORGAN IBDhaplo output

In IBDhaploRtools: Functions for the Analysis of IBD Haplo Output.

Description

These files are example output from the MORGAN IBDhaplo program. There is an ids and qibd file produced in each IBDhaplo run. This output is from two runs, each on the same original data one of which was genotypic (unphased) and one of which was haplotypic (phased). The true ibd states of the data are given in trueibd_phased, in terms of haplotypic IBD states.

There is also the vector posvec which gives the positions of each of the 2000 SNPs used in the data files.

Please refer to the MORGAN IBDhaplo documentation for information on how to generate these files and what they contain.

Usage

ids_phased

Format

ids files contain a 4x11 matrix, qibd files contain an 8000x18 matrix.

Source

MORGAN IBDhaplo

References

http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml

IBDhaploRtools documentation built on May 2, 2019, 6:48 p.m.