Builds and analyses Integral Projection Models (IPMs).

addPdfGrowthPic | Adds probability density functions of density function of... |

coerceGrowthObj | Function to coerce growth or survival objects, i.e., impose... |

convergeIPM | Iterates until obtaining the number of bins required so that... |

convertIncrement | Convert size increment according to time elapsed between... |

dataIPMpackCryptantha.csv | Cryptantha Perennial Dataset with Covariates |

dataIPMpackHypericumCov.csv | Hypericum Perennial Dataset with covariates |

dataIPMpackHypericum.csv | Hypericum Perennial Dataset |

dataIPMpackSilwood.csv | Silwood Monocarp Dataset |

dataIPMpackSuccisa2.csv | Succisa pratensis Dataset |

dataIPMpackSuccisa.csv | Succisa pratensis Dataset |

diagnosticsPmatrix | Creates a series of diagnostic graphs for a P matrix. |

discreteTrans-class | Class '"discreteTrans"' |

discreteTransInteger-class | Class '"discreteTransInteger"' |

elas | Estimates matrix element sensitivities and elasticities. |

envMatrix-class | Class "envMatrix" |

fecObj-class | Class "fecObj" |

fecObjInteger-class | Class "fecObjInteger" |

generateData | Generates random data in the form used by IPMpack. |

growSurv | Combines growth and survival. |

growth | Estimates growth probabilities. |

growthCum | Models growth allowing for cumulative bin estimation. |

growthCum-methods | ~~ Methods for Function 'growthCum' ~~ |

growth-methods | ~~ Methods for Function 'growth' ~~ |

growthModelComp | Compares growth and survival objects built from different... |

growthObj-class | Class "growthObj" |

growthObjDeclineVar-class | Class "growthObjDeclineVar" |

growthObjHossfeld-class | Class "growthObjHossfeld" |

growthObjIncr-class | Class "growthObjIncr" |

growthObjIncrDeclineVar-class | Class "growthObjIncrDeclineVar" |

growthObjLogIncr-class | Class '"growthObjLogIncr"' |

growthObjLogIncrDeclineVar-class | Class '"growthObjLogIncrDeclineVar"' |

growthObjNegBin-class | Class "growthObjNegBin" |

growthObjPois | Class "growthObjPois" |

growthObjTruncIncr-class | Class '"growthObjTruncIncr"' |

Hossfeld | Creates a Hossfeld function defining growth. |

IPMmatrix-class | Class '"IPMmatrix"' |

IPMpack-internal | Internal IPMpack objects. |

IPMpackNews | Show a text file containing package news and updates. |

IPMpack-package | Construction and analysis of integral projection models and... |

largeMatrixCalc | Calculates population growth rate (lambda) and stable stage... |

logit | Implements an inverse of the logistic transform. |

makeClonalObj | Function to build clonal reproduction objects |

makeCompoundCmatrix | Builds a compound C matrix. |

makeCompoundFmatrix | Builds a compound F matrix. |

makeCompoundPmatrix | Builds a compound P matrix. |

makeDiscreteTrans | Builds matrix for transitions between discrete (e.g.... |

makeDiscreteTransInteger | Builds matrix for transitions between discrete (e.g.... |

makeEnvObj | Builds environmental transition objects. |

makeFecObj | Function to build fecundity objects |

makeFecObjInteger | Function to build fecundity objects |

makeGrowthObj | Function to build growth objects |

makeGrowthObjHossfeld | Function to make a Hossfeld Growth Object |

makeIntegerFmatrix | Builds P and F matrices built off regressions fitted to... |

makeIPMCmatrix | Builds C matrices. |

makeIPMFmatrix | Builds F matrices. |

makeIPMmatrix | Builds IPM matrices. |

makeIPMPmatrix | Builds P matrices. |

makeOffspringObj | Function to build offspring objects |

makeSurvObj | Functions to build survival objects |

meanLifeExpect | Calculates the mean life expectancy. |

passageTime | Defines passage time to a chosen continuous stage. |

picGrow | Makes pictures of data with growth models |

picSurv | Makes pictures of survival. |

plotGrowthModelComp | Plots compared models built with 'growthModelComp' and... |

predictFutureDistribution | Predicts continuous (e.g. size) stage distribution in the... |

R0Calc | Calculates net reproductive rate (R0) from an IPM. |

sampleIPM | Builds list of IPMs or P matrices from list growth, survival,... |

sampleIPMOutput | Gets IPM output from a list of P matrices (only survival and... |

sampleSequentialIPMs | Makes a list of IPMs where there is a discrete covariate. |

sampleVitalRateObj | Calculates growth objects reflecting distribution of... |

sensParams | Estimates sensitivity and elasticity of lambda (or R0, or... |

simulateCarlina | Generates random data in the form used by IPMpack based on... |

sizeToAge | Estimates size/stage to age relationships |

stochGrowthRateManyCov | Estimates stochastic population growth rates (lambda_s) or... |

stochGrowthRateSampleList | Estimating the stochastic population growth rate (lambda_s)... |

stochPassageTime | Estimates passage time in a discretely varying environment. |

surv | Survival |

survivorship | Estimates survivorship between two time censuses. |

surv-methods | ~~ Methods for Function surv ~~ |

survObj-class | Class "survObj" |

survObjOverDisp-class | Class '"survObjOverDisp"' |

timeToSize | Projects how long it takes to get from a starting... |

varLifeExpect | Calculates variation in life expectancy in a discretely... |

varPassageTime | Estimates variation in passage time. |

wrapHossfeld | Fitting Hossfeld growth function. |

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