NSAByTotalAndFracB.matrix: Finds normal regions within tumoral samples (total,fracB)

In NSA: Post-normalization of total copy numbers

Description

Finds normal regions within tumoral samples (total,fracB), where total is the total (non-polymorphic) signal and fracB is the allele B fraction. It is only loci with a non-missing (NA) fracB value that are considered to be SNPs and normalized by CalMaTe. The other loci are left untouched.

Usage

## S3 method for class 'matrix'
NSAByTotalAndFracB(data, ..., verbose=FALSE)

Arguments

data	An Jx2 matrix, where J is the number of loci and 2 is total and fracB.
...	Not used.
verbose	See Verbose.

Value

Returns an Jx2 numeric array.

NSA documentation built on May 2, 2019, 4:58 p.m.