NSAByTotalAndFracB.matrix: Finds normal regions within tumoral samples (total,fracB)

Description

Finds normal regions within tumoral samples (total,fracB), where total is the total (non-polymorphic) signal and fracB is the allele B fraction. It is only loci with a non-missing (NA) fracB value that are considered to be SNPs and normalized by CalMaTe. The other loci are left untouched.

Usage

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## S3 method for class 'matrix'
NSAByTotalAndFracB(data, ..., verbose=FALSE)

Arguments

data

An Jx2 matrix, where J is the number of loci and 2 is total and fracB.

...

Not used.

verbose

See Verbose.

Value

Returns an Jx2 numeric array.


Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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