sampleNByTotalAndFracB.numeric: Normalize total copy numbers by samples (total,fracB)

In NSA: Post-normalization of total copy numbers

Description

Normalize total copy numbers by samples (total,fracB), where total is the total (non-polymorphic) signal and fracB is the allele B fraction. It is only loci with a non-missing (NA) fracB value that are considered to be SNPs and normalized by NSA. The other loci are left untouched.

Usage

## S3 method for class 'numeric'
sampleNByTotalAndFracB(data, references=NULL, ..., verbose=FALSE)

Arguments

data	An J numeric vector, where J is the number of loci for an specific sample.
references	An object specifying the normal regions of each sample.
...	Additional arguments passed to fitSNPsN.
verbose	See Verbose.

Value

Returns an Jx2 numeric array.

NSA documentation built on May 2, 2019, 4:58 p.m.