PhyloOrchard: Important and/or useful phylogenetic datasets
Version 0.3

This has chronograms for various taxa, pulled from the literature or donated by other scientists. Make sure to cite the original source of the tree/data!

Browse man pages Browse package API and functions Browse package files

AuthorBrian C O'Meara, Luke Harmon, Jon Eastman
Date of publication2013-06-14 13:49:03
MaintainerBrian C. O'Meara <omeara.brian@gmail.com>
LicenseGPL (>= 2)
Version0.3
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("PhyloOrchard", repos="http://R-Forge.R-project.org")

Man pages

AlfaroEtAl2009: Alfaro et al. 2009 tree of gnathostomes
BergmannEtAl2012: Bergmann and Irschick 2012 tree of squamates
BinindaEmondsEtAl2007: Bininda-Emonds et al. 2007 mammal supertree (corrected)
Conifers2012: Leslie et al. 2012 conifers
CowmanBellwood2011: Trees of coral reef fishes
Drosophila2012: Morales-Hojas and Vieira phylogeny of Drosophila
FabreEtAl2009: Fabre et al. 2009 primate tree
HardyCook2012: Hardy and Cook 2012 Ericaceae
HeathEtAl2012: Heath et al. 2012 trees of cute-looking mouse lemurs.
JaffeEtAl2011: Jaffe et al. 2011 tree of turtles
LohmannEtAl2013: Lohmann et al. 2013 tree of Bignonieae
LopezFernandezEtAl2012: Lopez-Fernandez et al. 2012 Neotropical cichlids
NauheimerEtAl2012: Nauheimer et al. 2012 tree of Araceae
Oaks2011: Oaks 2011 tree of crocodylians
PhyloOrchard-package: Chronograms of life
Pyron2011: Pyron tree of Lissamphibia, including fossil taxa
PyronWiens2011: Pyron and Wiens 2011 tree of amphibians
SantiniEtAl2009: Santini et al. tree of teleost fishes
Unpub1: Eastman et al. unpublished tree of salamanders
Unpub2: Unpublished tree of fish
Unpub3: Giant glomogram of vertebrates. Use at your own risk.
ZhangandWake2009: Zhang and Wake 2009 tree of caecilians. This tree is a bit of...

Functions

AlfaroEtAl2009 Man page
Apogonidae2011 Man page
BergmannEtAl2012 Man page
BinindaEmondsEtAl2007 Man page
Chaetodontidae2011 Man page
Conifers2012 Man page
Drosophila2012 Man page
Drosophila2012_large Man page
Drosophila2012_small Man page
FabreEtAl2009 Man page
HardyCook2012 Man page
HeathEtAl2012 Man page
JaffeEtAl2011 Man page
Labridae2011 Man page
LohmannEtAl2013 Man page
LopezFernandezEtAl2012 Man page
NauheimerEtAl2012 Man page
Oaks2011 Man page
PhyloOrchard Man page
PhyloOrchard-package Man page
Pomacentridae2011 Man page
Pyron2011 Man page
PyronWiens2011 Man page
SantiniEtAl2009 Man page
Unpub1 Man page
Unpub2 Man page
Unpub3 Man page
ZhangandWake2009 Man page

Files

DESCRIPTION
NAMESPACE
data
data/AlfaroEtAl2009.rda
data/Apogonidae2011.rda
data/BergmannEtAl2012.rda
data/BinindaEmondsEtAl2007.rda
data/Chaetodontidae2011.rda
data/Conifers2012.rda
data/Drosophila2012_large.rda
data/Drosophila2012_small.rda
data/FabreEtAl2009.rda
data/HardyCook2012.rda
data/HeathEtAl2012.rda
data/JaffeEtAl2011.rda
data/Labridae2011.rda
data/LohmannEtAl2013.rda
data/LopezFernandezEtAl2012.rda
data/NauheimerEtAl2012.rda
data/Oaks2011.rda
data/Pomacentridae2011.rda
data/Pyron2011.rda
data/PyronWiens2011.rda
data/SantiniEtAl2009.rda
data/Unpub1.rda
data/Unpub2.rda
data/Unpub3.rda
data/ZhangandWake2009.rda
data/datalist
man
man/AlfaroEtAl2009.Rd
man/BergmannEtAl2012.Rd
man/BinindaEmondsEtAl2007.Rd
man/Conifers2012.Rd
man/CowmanBellwood2011.Rd
man/Drosophila2012.Rd
man/FabreEtAl2009.Rd
man/HardyCook2012.Rd
man/HeathEtAl2012.Rd
man/JaffeEtAl2011.Rd
man/LohmannEtAl2013.Rd
man/LopezFernandezEtAl2012.Rd
man/NauheimerEtAl2012.Rd
man/Oaks2011.Rd
man/PhyloOrchard-package.Rd
man/Pyron2011.Rd
man/PyronWiens2011.Rd
man/SantiniEtAl2009.Rd
man/Unpub1.Rd
man/Unpub2.Rd
man/Unpub3.Rd
man/ZhangandWake2009.Rd
PhyloOrchard documentation built on May 21, 2017, 1:18 a.m.