PhyloOrchard: Important and/or useful phylogenetic datasets

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This has chronograms for various taxa, pulled from the literature or donated by other scientists. Make sure to cite the original source of the tree/data!

Author
Brian C O'Meara, Luke Harmon, Jon Eastman
Date of publication
2013-06-14 13:49:03
Maintainer
Brian C. O'Meara <omeara.brian@gmail.com>
License
GPL (>= 2)
Version
0.3

View on R-Forge

Man pages

AlfaroEtAl2009
Alfaro et al. 2009 tree of gnathostomes
BergmannEtAl2012
Bergmann and Irschick 2012 tree of squamates
BinindaEmondsEtAl2007
Bininda-Emonds et al. 2007 mammal supertree (corrected)
Conifers2012
Leslie et al. 2012 conifers
CowmanBellwood2011
Trees of coral reef fishes
Drosophila2012
Morales-Hojas and Vieira phylogeny of Drosophila
FabreEtAl2009
Fabre et al. 2009 primate tree
HardyCook2012
Hardy and Cook 2012 Ericaceae
HeathEtAl2012
Heath et al. 2012 trees of cute-looking mouse lemurs.
JaffeEtAl2011
Jaffe et al. 2011 tree of turtles
LohmannEtAl2013
Lohmann et al. 2013 tree of Bignonieae
LopezFernandezEtAl2012
Lopez-Fernandez et al. 2012 Neotropical cichlids
NauheimerEtAl2012
Nauheimer et al. 2012 tree of Araceae
Oaks2011
Oaks 2011 tree of crocodylians
PhyloOrchard-package
Chronograms of life
Pyron2011
Pyron tree of Lissamphibia, including fossil taxa
PyronWiens2011
Pyron and Wiens 2011 tree of amphibians
SantiniEtAl2009
Santini et al. tree of teleost fishes
Unpub1
Eastman et al. unpublished tree of salamanders
Unpub2
Unpublished tree of fish
Unpub3
Giant glomogram of vertebrates. Use at your own risk.
ZhangandWake2009
Zhang and Wake 2009 tree of caecilians. This tree is a bit of...

Files in this package

PhyloOrchard/DESCRIPTION
PhyloOrchard/NAMESPACE
PhyloOrchard/data
PhyloOrchard/data/AlfaroEtAl2009.rda
PhyloOrchard/data/Apogonidae2011.rda
PhyloOrchard/data/BergmannEtAl2012.rda
PhyloOrchard/data/BinindaEmondsEtAl2007.rda
PhyloOrchard/data/Chaetodontidae2011.rda
PhyloOrchard/data/Conifers2012.rda
PhyloOrchard/data/Drosophila2012_large.rda
PhyloOrchard/data/Drosophila2012_small.rda
PhyloOrchard/data/FabreEtAl2009.rda
PhyloOrchard/data/HardyCook2012.rda
PhyloOrchard/data/HeathEtAl2012.rda
PhyloOrchard/data/JaffeEtAl2011.rda
PhyloOrchard/data/Labridae2011.rda
PhyloOrchard/data/LohmannEtAl2013.rda
PhyloOrchard/data/LopezFernandezEtAl2012.rda
PhyloOrchard/data/NauheimerEtAl2012.rda
PhyloOrchard/data/Oaks2011.rda
PhyloOrchard/data/Pomacentridae2011.rda
PhyloOrchard/data/Pyron2011.rda
PhyloOrchard/data/PyronWiens2011.rda
PhyloOrchard/data/SantiniEtAl2009.rda
PhyloOrchard/data/Unpub1.rda
PhyloOrchard/data/Unpub2.rda
PhyloOrchard/data/Unpub3.rda
PhyloOrchard/data/ZhangandWake2009.rda
PhyloOrchard/data/datalist
PhyloOrchard/man
PhyloOrchard/man/AlfaroEtAl2009.Rd
PhyloOrchard/man/BergmannEtAl2012.Rd
PhyloOrchard/man/BinindaEmondsEtAl2007.Rd
PhyloOrchard/man/Conifers2012.Rd
PhyloOrchard/man/CowmanBellwood2011.Rd
PhyloOrchard/man/Drosophila2012.Rd
PhyloOrchard/man/FabreEtAl2009.Rd
PhyloOrchard/man/HardyCook2012.Rd
PhyloOrchard/man/HeathEtAl2012.Rd
PhyloOrchard/man/JaffeEtAl2011.Rd
PhyloOrchard/man/LohmannEtAl2013.Rd
PhyloOrchard/man/LopezFernandezEtAl2012.Rd
PhyloOrchard/man/NauheimerEtAl2012.Rd
PhyloOrchard/man/Oaks2011.Rd
PhyloOrchard/man/PhyloOrchard-package.Rd
PhyloOrchard/man/Pyron2011.Rd
PhyloOrchard/man/PyronWiens2011.Rd
PhyloOrchard/man/SantiniEtAl2009.Rd
PhyloOrchard/man/Unpub1.Rd
PhyloOrchard/man/Unpub2.Rd
PhyloOrchard/man/Unpub3.Rd
PhyloOrchard/man/ZhangandWake2009.Rd