HeathEtAl2012: Heath et al. 2012 trees of cute-looking mouse lemurs.

In PhyloOrchard: Important and/or useful phylogenetic datasets

Description

This is a set of 20,000 phylogenetic trees in multiphylo (ape) format.

Usage

data(HeathEtAl2012)

Details

Node age estimates were sampled from 6 independent MCMC analyses using DPPDiv (Heath et al. 2012; http://cteg.berkeley.edu/software.html#dppdiv) on a fixed topology, using the data and tree from Yang and Yoder (2003).

Source

Heath, T. A., M. T. Holder and J. P. Huelsenbeck. 2012. A Dirichlet process prior for estimating lineage-specific substitution rates. Mol. Biol. Evol. 29: 939-955.

Yang, Z. and A. D. Yoder. 2003. Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species. Syst. Biol. 52: 705-716.

Examples

#not run
#data(HeathEtAl2012)

#library(ape)
#treeOne<-HeathEtAl2012$trees[[1]]

#plot the tree
#plot(treeOne,show.node.label=TRUE)

PhyloOrchard documentation built on May 2, 2019, 5:22 p.m.