PlotVsHkg: Plot Ct Values when normalised against different housekeeping...
In QCqPCR: Functions for quality control of RT-qPCR data

Description Usage Arguments Details Value Author(s)

Takes normalised qPCR data and plot the different Ct values from the different house keeping genes

plotVsHkg(qPCRBatch, ...)

## S4 method for signature 'qPCRBatch'
plotVsHkg(qPCRBatch, hkgs, writeToFile = FALSE)

`qPCRBatch`	data set containing data on different Ct values normed to the different HKGs
`...`	Extra arguments, detailed below
`hkgs`	Vector of housekeeping genes. Must all be present in the exprs matrix
`writeToFile`	Option to write output to file

Takes normalised qPCR data and plot the different Ct values from the different house keeping genes. Plots HKGs against each other on the same graph, ordered by a single HKG

produces graph and optionally writes to png if called.

James Perkins jperkins@biochem.ucl.ac.uk

QCqPCR documentation built on May 2, 2019, 6:30 p.m.