R2BayesX: Estimate Structured Additive Regression Models with 'BayesX'

An R interface to estimate structured additive regression (STAR) models with 'BayesX'.

Author
Nikolaus Umlauf [aut, cre], Thomas Kneib [aut], Stefan Lang [aut], Achim Zeileis [aut]
Date of publication
2016-11-17 10:48:35
Maintainer
Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
License
GPL-2 | GPL-3
Version
1.1-0

View on R-Forge

Man pages

add.neighbor
Add Neighborhood Relations
bayesx
Estimate STAR Models with BayesX
bayesx.construct
Construct BayesX Model Term Objects
bayesx.control
Control Parameters for BayesX
bayesx.term.options
Show BayesX Term Options
BeechBnd
Beech Location Map
BeechGra
Beech Neighborhood Information
bnd2gra
Convert Boundary Format to Graph Format
colorlegend
Plot a Color Legend
cprob
Extract Contour Probabilities
delete.neighbor
Delete Neighborhood Relations
DIC
Deviance Information Criterion
FantasyBnd
Fantasy Map
fitted.bayesx
Extract BayesX Fitted Values and Residuals
ForestHealth
Forest Health Data
GAMart
GAM Artificial Data Set
GCV
Gerneralized Cross Validation Criterion
GermanyBnd
Germany Map
get.neighbor
Obtain Neighbors of Given Regions
getscript
Generate an executable R fitted model script
GRstats
Compute Gelman and Rubin's convergence diagnostics from...
logfile
BayesX Log-Files
MunichBnd
Munich Map
nbAndGraConversion
Convert nb and gra format into each other
parse.bayesx.input
Parse BayesX Input
plot2d
2D Effect Plot
plot3d
3D Effect Plot
plot.bayesx
Default BayesX Plotting
plotblock
Factor Variable and Random Effects Plots
plotmap
Plot Maps
plotsamples
Plot Sampling Path(s) of Coefficient(s) and Variance(s)
predict.bayesx
Prediction from fitted BayesX objects
prgfile
BayesX Program-Files
R2BayesX-package
Estimate STAR Models with BayesX
read.bayesx.output
Read BayesX Output from Directories
read.bnd
Read Geographical Information in Boundary Format
read.gra
Read Geographical Information in Graph Format
runtime
BayesX Program-Runtimes
samples
Extract Samples of Coefficients and Variances
shp2bnd
convert a shape-file into a boundary object
sliceplot
Plot Slices of Bivariate Functions
spAndBndConversion
Convert sp and bnd format into each other
summary.bayesx
Bayesx Summary Statistics
sx
Construct BayesX Model Terms in A Formula
term.freqs
Extract model term selection frequencies.
write.bayesx.input
Write the BayesX Program
write.bnd
Saving Maps in Boundary Format
write.gra
Saving Maps in Graph Format
ZambiaBnd
Zambia Map
ZambiaNutrition
Determinants of Childhood Malnutrition in Zambia

Files in this package

R2BayesX/DESCRIPTION
R2BayesX/NAMESPACE
R2BayesX/R
R2BayesX/R/AIC.bayesx.R
R2BayesX/R/BIC.bayesx.R
R2BayesX/R/DIC.R
R2BayesX/R/DIC.bayesx.R
R2BayesX/R/GAMart.R
R2BayesX/R/GCV.R
R2BayesX/R/GCV.bayesx.R
R2BayesX/R/GRstats.R
R2BayesX/R/Predict.matrix.nu.smooth.R
R2BayesX/R/VPC.R
R2BayesX/R/add.neighbor.R
R2BayesX/R/bayesx.R
R2BayesX/R/bayesx.construct.R
R2BayesX/R/bayesx.construct.bl.smooth.spec.R
R2BayesX/R/bayesx.construct.cs.smooth.spec.R
R2BayesX/R/bayesx.construct.factor.smooth.spec.R
R2BayesX/R/bayesx.construct.generic.smooth.spec.R
R2BayesX/R/bayesx.construct.gk.smooth.spec.R
R2BayesX/R/bayesx.construct.gs.smooth.spec.R
R2BayesX/R/bayesx.construct.kr.smooth.spec.R
R2BayesX/R/bayesx.construct.lasso.smooth.spec.R
R2BayesX/R/bayesx.construct.mrf.smooth.spec.R
R2BayesX/R/bayesx.construct.nigmix.smooth.spec.R
R2BayesX/R/bayesx.construct.offset.smooth.spec.R
R2BayesX/R/bayesx.construct.ps.smooth.spec.R
R2BayesX/R/bayesx.construct.ra.smooth.spec.R
R2BayesX/R/bayesx.construct.ridge.smooth.spec.R
R2BayesX/R/bayesx.construct.rw1.smooth.spec.R
R2BayesX/R/bayesx.construct.rw2.smooth.spec.R
R2BayesX/R/bayesx.construct.season.smooth.spec.R
R2BayesX/R/bayesx.construct.te.smooth.spec.R
R2BayesX/R/bayesx.construct.tensor.smooth.spec.R
R2BayesX/R/bayesx.control.R
R2BayesX/R/bayesx.reformate.R
R2BayesX/R/bayesx.term.options.R
R2BayesX/R/bayesx_logfile.R
R2BayesX/R/bayesx_prgfile.R
R2BayesX/R/bayesx_runtime.R
R2BayesX/R/blow.up.resid.R
R2BayesX/R/bnd2gra.R
R2BayesX/R/c.bayesx.R
R2BayesX/R/centroidpos.R
R2BayesX/R/centroids.R
R2BayesX/R/centroidtext.R
R2BayesX/R/chacol.R
R2BayesX/R/coef.bayesx.R
R2BayesX/R/coeffun.R
R2BayesX/R/colorlegend.R
R2BayesX/R/compute.x.id.R
R2BayesX/R/confbayesx.R
R2BayesX/R/confint.bayesx.R
R2BayesX/R/construct.shrw.R
R2BayesX/R/cpoint.R
R2BayesX/R/cpos.R
R2BayesX/R/cprob.R
R2BayesX/R/d2contrsum.R
R2BayesX/R/delete.Nulls.R
R2BayesX/R/delete.args.R
R2BayesX/R/delete.neighbor.R
R2BayesX/R/df2m.R
R2BayesX/R/df2m2.R
R2BayesX/R/do.xt.R
R2BayesX/R/dopos.R
R2BayesX/R/drawmap.R
R2BayesX/R/edf.R
R2BayesX/R/extract.model.diagnostic.R
R2BayesX/R/f2int.R
R2BayesX/R/find.fixed.effects.R
R2BayesX/R/find.limits.R
R2BayesX/R/find.smooth.random.R
R2BayesX/R/fitted.bayesx.R
R2BayesX/R/geo.smooth.spec.R
R2BayesX/R/get.eta.R
R2BayesX/R/get.kde.range.R
R2BayesX/R/get.model.R
R2BayesX/R/get.neighbor.R
R2BayesX/R/get.scale.R
R2BayesX/R/get.unique.R
R2BayesX/R/getscript.R
R2BayesX/R/getuit.R
R2BayesX/R/help.map.name.R
R2BayesX/R/interp2.R
R2BayesX/R/is.f.R
R2BayesX/R/is.rt.R
R2BayesX/R/is.sm.R
R2BayesX/R/logLik.bayesx.R
R2BayesX/R/make.label.R
R2BayesX/R/make_by.R
R2BayesX/R/make_pal.R
R2BayesX/R/measure.R
R2BayesX/R/model.frame.bayesx.R
R2BayesX/R/mum.R
R2BayesX/R/nbAndGraConversion.R
R2BayesX/R/neffects.R
R2BayesX/R/parse.bayesx.input.R
R2BayesX/R/parse.random.bayesx.R
R2BayesX/R/pd.R
R2BayesX/R/plot.bayesx.R
R2BayesX/R/plot.bnd.R
R2BayesX/R/plot.fit.bayesx.R
R2BayesX/R/plot.geo.bayesx.R
R2BayesX/R/plot.linear.bayesx.R
R2BayesX/R/plot.mrf.bayesx.R
R2BayesX/R/plot.random.bayesx.R
R2BayesX/R/plot.sm.bayesx.R
R2BayesX/R/plot.varying.bayesx.R
R2BayesX/R/plot2d.R
R2BayesX/R/plot2d.default.R
R2BayesX/R/plot3d.R
R2BayesX/R/plotblock.R
R2BayesX/R/plotmap.R
R2BayesX/R/plotnonp.R
R2BayesX/R/plotsamples.R
R2BayesX/R/plotsurf.R
R2BayesX/R/predict.bayesx.R
R2BayesX/R/print.bayesx.R
R2BayesX/R/print.summary.bayesx.R
R2BayesX/R/r.R
R2BayesX/R/r2bayesx-internal.R
R2BayesX/R/read.bayesx.model.output.R
R2BayesX/R/read.bayesx.output.R
R2BayesX/R/read.bnd.R
R2BayesX/R/read.gra.R
R2BayesX/R/recol.R
R2BayesX/R/residuals.bayesx.R
R2BayesX/R/resplit.R
R2BayesX/R/ringDirxy.R
R2BayesX/R/rmf.R
R2BayesX/R/rrd.R
R2BayesX/R/s4class.R
R2BayesX/R/s4dim.R
R2BayesX/R/s4hm.R
R2BayesX/R/samples.R
R2BayesX/R/search.bayesx.models.R
R2BayesX/R/search.bayesx.tex.R
R2BayesX/R/set.hlevel.stuff.R
R2BayesX/R/set.plot2d.specs.R
R2BayesX/R/setmfrow.R
R2BayesX/R/sfoofun.R
R2BayesX/R/shp2bnd.R
R2BayesX/R/sliceplot.R
R2BayesX/R/smi.R
R2BayesX/R/smooth.construct.nu.smooth.spec.R
R2BayesX/R/spAndBndConversion.R
R2BayesX/R/split.terms.R
R2BayesX/R/splitme.R
R2BayesX/R/summary.bayesx.R
R2BayesX/R/sx.R
R2BayesX/R/term.freqs.R
R2BayesX/R/term.names.R
R2BayesX/R/term.reorder.R
R2BayesX/R/terms.bayesx.R
R2BayesX/R/textfun.R
R2BayesX/R/unique.id.R
R2BayesX/R/which.plots.R
R2BayesX/R/write.bayesx.input.R
R2BayesX/R/write.bnd.R
R2BayesX/R/write.gra.R
R2BayesX/R/write.prg.setup.R
R2BayesX/R/write.term.info.R
R2BayesX/R/x2int.R
R2BayesX/data
R2BayesX/data/BeechBnd.rda
R2BayesX/data/BeechGra.rda
R2BayesX/data/FantasyBnd.rda
R2BayesX/data/ForestHealth.rda
R2BayesX/data/GAMart.rda
R2BayesX/data/GermanyBnd.rda
R2BayesX/data/MunichBnd.rda
R2BayesX/data/ZambiaBnd.rda
R2BayesX/data/ZambiaNutrition.rda
R2BayesX/demo
R2BayesX/demo/00Index
R2BayesX/demo/ForestHealth.R
R2BayesX/demo/ZambiaNutrition.R
R2BayesX/inst
R2BayesX/inst/CITATION
R2BayesX/inst/examples
R2BayesX/inst/examples/Germany.bnd
R2BayesX/inst/examples/Germany.gra
R2BayesX/inst/examples/Northamerica.dbf
R2BayesX/inst/examples/Northamerica.shp
R2BayesX/inst/examples/Northamerica.shx
R2BayesX/inst/examples/ex01
R2BayesX/inst/examples/ex01/exmodel.data.raw
R2BayesX/inst/examples/ex01/exmodel_FixedEffects1.res
R2BayesX/inst/examples/ex01/exmodel_FixedEffects1_sample.raw
R2BayesX/inst/examples/ex01/exmodel_deviance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_lambda.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_var.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_variance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_lambda.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_var.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_variance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_model_summary.tex
R2BayesX/inst/examples/ex01/exmodel_predictmean.raw
R2BayesX/inst/examples/ex01/exmodel_scale.res
R2BayesX/inst/examples/ex01/exmodel_scale_sample.raw
R2BayesX/inst/examples/ex02
R2BayesX/inst/examples/ex02/nonparametric.raw
R2BayesX/inst/examples/ex02/nonparametric2_f_time_pspline.res
R2BayesX/inst/examples/ex02/nonparametric_f_x_pspline.res
R2BayesX/inst/examples/ex02/nonparametric_f_x_pspline_sample.raw
R2BayesX/inst/examples/ex02/surface.raw
R2BayesX/inst/examples/ex02/surface_f_x1_x2_pspline.res
R2BayesX/man
R2BayesX/man/BeechBnd.Rd
R2BayesX/man/BeechGra.Rd
R2BayesX/man/DIC.Rd
R2BayesX/man/FantasyBnd.Rd
R2BayesX/man/ForestHealth.Rd
R2BayesX/man/GAMart.Rd
R2BayesX/man/GCV.Rd
R2BayesX/man/GRstats.Rd
R2BayesX/man/GermanyBnd.Rd
R2BayesX/man/MunichBnd.Rd
R2BayesX/man/R2BayesX-package.Rd
R2BayesX/man/ZambiaBnd.Rd
R2BayesX/man/ZambiaNutrition.Rd
R2BayesX/man/add.neighbor.Rd
R2BayesX/man/bayesx.Rd
R2BayesX/man/bayesx.construct.Rd
R2BayesX/man/bayesx.control.Rd
R2BayesX/man/bayesx.term.options.Rd
R2BayesX/man/bnd2gra.Rd
R2BayesX/man/colorlegend.Rd
R2BayesX/man/cprob.Rd
R2BayesX/man/delete.neighbor.Rd
R2BayesX/man/fitted.bayesx.Rd
R2BayesX/man/get.neighbor.Rd
R2BayesX/man/getscript.Rd
R2BayesX/man/logfile.Rd
R2BayesX/man/nbAndGraConversion.Rd
R2BayesX/man/parse.bayesx.input.Rd
R2BayesX/man/plot.bayesx.Rd
R2BayesX/man/plot2d.Rd
R2BayesX/man/plot3d.Rd
R2BayesX/man/plotblock.Rd
R2BayesX/man/plotmap.Rd
R2BayesX/man/plotsamples.Rd
R2BayesX/man/predict.bayesx.Rd
R2BayesX/man/prgfile.Rd
R2BayesX/man/read.bayesx.output.Rd
R2BayesX/man/read.bnd.Rd
R2BayesX/man/read.gra.Rd
R2BayesX/man/runtime.Rd
R2BayesX/man/samples.Rd
R2BayesX/man/shp2bnd.Rd
R2BayesX/man/sliceplot.Rd
R2BayesX/man/spAndBndConversion.Rd
R2BayesX/man/summary.bayesx.Rd
R2BayesX/man/sx.Rd
R2BayesX/man/term.freqs.Rd
R2BayesX/man/write.bayesx.input.Rd
R2BayesX/man/write.bnd.Rd
R2BayesX/man/write.gra.Rd
R2BayesX/src
R2BayesX/src/bayesx.c