R2BayesX: Estimate Structured Additive Regression Models with 'BayesX'

An R interface to estimate structured additive regression (STAR) models with 'BayesX'.

AuthorNikolaus Umlauf [aut, cre], Thomas Kneib [aut], Stefan Lang [aut], Achim Zeileis [aut]
Date of publication2016-11-17 10:48:35
MaintainerNikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
LicenseGPL-2 | GPL-3
Version1.1-0

View on R-Forge

Man pages

add.neighbor: Add Neighborhood Relations

bayesx: Estimate STAR Models with BayesX

bayesx.construct: Construct BayesX Model Term Objects

bayesx.control: Control Parameters for BayesX

bayesx.term.options: Show BayesX Term Options

BeechBnd: Beech Location Map

BeechGra: Beech Neighborhood Information

bnd2gra: Convert Boundary Format to Graph Format

colorlegend: Plot a Color Legend

cprob: Extract Contour Probabilities

delete.neighbor: Delete Neighborhood Relations

DIC: Deviance Information Criterion

FantasyBnd: Fantasy Map

fitted.bayesx: Extract BayesX Fitted Values and Residuals

ForestHealth: Forest Health Data

GAMart: GAM Artificial Data Set

GCV: Gerneralized Cross Validation Criterion

GermanyBnd: Germany Map

get.neighbor: Obtain Neighbors of Given Regions

getscript: Generate an executable R fitted model script

GRstats: Compute Gelman and Rubin's convergence diagnostics from...

logfile: BayesX Log-Files

MunichBnd: Munich Map

nbAndGraConversion: Convert nb and gra format into each other

parse.bayesx.input: Parse BayesX Input

plot2d: 2D Effect Plot

plot3d: 3D Effect Plot

plot.bayesx: Default BayesX Plotting

plotblock: Factor Variable and Random Effects Plots

plotmap: Plot Maps

plotsamples: Plot Sampling Path(s) of Coefficient(s) and Variance(s)

predict.bayesx: Prediction from fitted BayesX objects

prgfile: BayesX Program-Files

R2BayesX-package: Estimate STAR Models with BayesX

read.bayesx.output: Read BayesX Output from Directories

read.bnd: Read Geographical Information in Boundary Format

read.gra: Read Geographical Information in Graph Format

runtime: BayesX Program-Runtimes

samples: Extract Samples of Coefficients and Variances

shp2bnd: convert a shape-file into a boundary object

sliceplot: Plot Slices of Bivariate Functions

spAndBndConversion: Convert sp and bnd format into each other

summary.bayesx: Bayesx Summary Statistics

sx: Construct BayesX Model Terms in A Formula

term.freqs: Extract model term selection frequencies.

write.bayesx.input: Write the BayesX Program

write.bnd: Saving Maps in Boundary Format

write.gra: Saving Maps in Graph Format

ZambiaBnd: Zambia Map

ZambiaNutrition: Determinants of Childhood Malnutrition in Zambia

Files in this package

R2BayesX/DESCRIPTION
R2BayesX/NAMESPACE
R2BayesX/R
R2BayesX/R/AIC.bayesx.R R2BayesX/R/BIC.bayesx.R R2BayesX/R/DIC.R R2BayesX/R/DIC.bayesx.R R2BayesX/R/GAMart.R R2BayesX/R/GCV.R R2BayesX/R/GCV.bayesx.R R2BayesX/R/GRstats.R R2BayesX/R/Predict.matrix.nu.smooth.R R2BayesX/R/VPC.R R2BayesX/R/add.neighbor.R R2BayesX/R/bayesx.R R2BayesX/R/bayesx.construct.R R2BayesX/R/bayesx.construct.bl.smooth.spec.R R2BayesX/R/bayesx.construct.cs.smooth.spec.R R2BayesX/R/bayesx.construct.factor.smooth.spec.R R2BayesX/R/bayesx.construct.generic.smooth.spec.R R2BayesX/R/bayesx.construct.gk.smooth.spec.R R2BayesX/R/bayesx.construct.gs.smooth.spec.R R2BayesX/R/bayesx.construct.kr.smooth.spec.R R2BayesX/R/bayesx.construct.lasso.smooth.spec.R R2BayesX/R/bayesx.construct.mrf.smooth.spec.R R2BayesX/R/bayesx.construct.nigmix.smooth.spec.R R2BayesX/R/bayesx.construct.offset.smooth.spec.R R2BayesX/R/bayesx.construct.ps.smooth.spec.R R2BayesX/R/bayesx.construct.ra.smooth.spec.R R2BayesX/R/bayesx.construct.ridge.smooth.spec.R R2BayesX/R/bayesx.construct.rw1.smooth.spec.R R2BayesX/R/bayesx.construct.rw2.smooth.spec.R R2BayesX/R/bayesx.construct.season.smooth.spec.R R2BayesX/R/bayesx.construct.te.smooth.spec.R R2BayesX/R/bayesx.construct.tensor.smooth.spec.R R2BayesX/R/bayesx.control.R R2BayesX/R/bayesx.reformate.R R2BayesX/R/bayesx.term.options.R R2BayesX/R/bayesx_logfile.R R2BayesX/R/bayesx_prgfile.R R2BayesX/R/bayesx_runtime.R R2BayesX/R/blow.up.resid.R R2BayesX/R/bnd2gra.R R2BayesX/R/c.bayesx.R R2BayesX/R/centroidpos.R R2BayesX/R/centroids.R R2BayesX/R/centroidtext.R R2BayesX/R/chacol.R R2BayesX/R/coef.bayesx.R R2BayesX/R/coeffun.R R2BayesX/R/colorlegend.R R2BayesX/R/compute.x.id.R R2BayesX/R/confbayesx.R R2BayesX/R/confint.bayesx.R R2BayesX/R/construct.shrw.R R2BayesX/R/cpoint.R R2BayesX/R/cpos.R R2BayesX/R/cprob.R R2BayesX/R/d2contrsum.R R2BayesX/R/delete.Nulls.R R2BayesX/R/delete.args.R R2BayesX/R/delete.neighbor.R R2BayesX/R/df2m.R R2BayesX/R/df2m2.R R2BayesX/R/do.xt.R R2BayesX/R/dopos.R R2BayesX/R/drawmap.R R2BayesX/R/edf.R R2BayesX/R/extract.model.diagnostic.R R2BayesX/R/f2int.R R2BayesX/R/find.fixed.effects.R R2BayesX/R/find.limits.R R2BayesX/R/find.smooth.random.R R2BayesX/R/fitted.bayesx.R R2BayesX/R/geo.smooth.spec.R R2BayesX/R/get.eta.R R2BayesX/R/get.kde.range.R R2BayesX/R/get.model.R R2BayesX/R/get.neighbor.R R2BayesX/R/get.scale.R R2BayesX/R/get.unique.R R2BayesX/R/getscript.R R2BayesX/R/getuit.R R2BayesX/R/help.map.name.R R2BayesX/R/interp2.R R2BayesX/R/is.f.R R2BayesX/R/is.rt.R R2BayesX/R/is.sm.R R2BayesX/R/logLik.bayesx.R R2BayesX/R/make.label.R R2BayesX/R/make_by.R R2BayesX/R/make_pal.R R2BayesX/R/measure.R R2BayesX/R/model.frame.bayesx.R R2BayesX/R/mum.R R2BayesX/R/nbAndGraConversion.R R2BayesX/R/neffects.R R2BayesX/R/parse.bayesx.input.R R2BayesX/R/parse.random.bayesx.R R2BayesX/R/pd.R R2BayesX/R/plot.bayesx.R R2BayesX/R/plot.bnd.R R2BayesX/R/plot.fit.bayesx.R R2BayesX/R/plot.geo.bayesx.R R2BayesX/R/plot.linear.bayesx.R R2BayesX/R/plot.mrf.bayesx.R R2BayesX/R/plot.random.bayesx.R R2BayesX/R/plot.sm.bayesx.R R2BayesX/R/plot.varying.bayesx.R R2BayesX/R/plot2d.R R2BayesX/R/plot2d.default.R R2BayesX/R/plot3d.R R2BayesX/R/plotblock.R R2BayesX/R/plotmap.R R2BayesX/R/plotnonp.R R2BayesX/R/plotsamples.R R2BayesX/R/plotsurf.R R2BayesX/R/predict.bayesx.R R2BayesX/R/print.bayesx.R R2BayesX/R/print.summary.bayesx.R R2BayesX/R/r.R R2BayesX/R/r2bayesx-internal.R R2BayesX/R/read.bayesx.model.output.R R2BayesX/R/read.bayesx.output.R R2BayesX/R/read.bnd.R R2BayesX/R/read.gra.R R2BayesX/R/recol.R R2BayesX/R/residuals.bayesx.R R2BayesX/R/resplit.R R2BayesX/R/ringDirxy.R R2BayesX/R/rmf.R R2BayesX/R/rrd.R R2BayesX/R/s4class.R R2BayesX/R/s4dim.R R2BayesX/R/s4hm.R R2BayesX/R/samples.R R2BayesX/R/search.bayesx.models.R R2BayesX/R/search.bayesx.tex.R R2BayesX/R/set.hlevel.stuff.R R2BayesX/R/set.plot2d.specs.R R2BayesX/R/setmfrow.R R2BayesX/R/sfoofun.R R2BayesX/R/shp2bnd.R R2BayesX/R/sliceplot.R R2BayesX/R/smi.R R2BayesX/R/smooth.construct.nu.smooth.spec.R R2BayesX/R/spAndBndConversion.R R2BayesX/R/split.terms.R R2BayesX/R/splitme.R R2BayesX/R/summary.bayesx.R R2BayesX/R/sx.R R2BayesX/R/term.freqs.R R2BayesX/R/term.names.R R2BayesX/R/term.reorder.R R2BayesX/R/terms.bayesx.R R2BayesX/R/textfun.R R2BayesX/R/unique.id.R R2BayesX/R/which.plots.R R2BayesX/R/write.bayesx.input.R R2BayesX/R/write.bnd.R R2BayesX/R/write.gra.R R2BayesX/R/write.prg.setup.R R2BayesX/R/write.term.info.R R2BayesX/R/x2int.R
R2BayesX/data
R2BayesX/data/BeechBnd.rda
R2BayesX/data/BeechGra.rda
R2BayesX/data/FantasyBnd.rda
R2BayesX/data/ForestHealth.rda
R2BayesX/data/GAMart.rda
R2BayesX/data/GermanyBnd.rda
R2BayesX/data/MunichBnd.rda
R2BayesX/data/ZambiaBnd.rda
R2BayesX/data/ZambiaNutrition.rda
R2BayesX/demo
R2BayesX/demo/00Index
R2BayesX/demo/ForestHealth.R
R2BayesX/demo/ZambiaNutrition.R
R2BayesX/inst
R2BayesX/inst/CITATION
R2BayesX/inst/examples
R2BayesX/inst/examples/Germany.bnd
R2BayesX/inst/examples/Germany.gra
R2BayesX/inst/examples/Northamerica.dbf
R2BayesX/inst/examples/Northamerica.shp
R2BayesX/inst/examples/Northamerica.shx
R2BayesX/inst/examples/ex01
R2BayesX/inst/examples/ex01/exmodel.data.raw
R2BayesX/inst/examples/ex01/exmodel_FixedEffects1.res
R2BayesX/inst/examples/ex01/exmodel_FixedEffects1_sample.raw
R2BayesX/inst/examples/ex01/exmodel_deviance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_lambda.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_var.res
R2BayesX/inst/examples/ex01/exmodel_f_id_spatial_variance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_lambda.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_sample.raw
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_var.res
R2BayesX/inst/examples/ex01/exmodel_f_x_pspline_variance_sample.raw
R2BayesX/inst/examples/ex01/exmodel_model_summary.tex
R2BayesX/inst/examples/ex01/exmodel_predictmean.raw
R2BayesX/inst/examples/ex01/exmodel_scale.res
R2BayesX/inst/examples/ex01/exmodel_scale_sample.raw
R2BayesX/inst/examples/ex02
R2BayesX/inst/examples/ex02/nonparametric.raw
R2BayesX/inst/examples/ex02/nonparametric2_f_time_pspline.res
R2BayesX/inst/examples/ex02/nonparametric_f_x_pspline.res
R2BayesX/inst/examples/ex02/nonparametric_f_x_pspline_sample.raw
R2BayesX/inst/examples/ex02/surface.raw
R2BayesX/inst/examples/ex02/surface_f_x1_x2_pspline.res
R2BayesX/man
R2BayesX/man/BeechBnd.Rd R2BayesX/man/BeechGra.Rd R2BayesX/man/DIC.Rd R2BayesX/man/FantasyBnd.Rd R2BayesX/man/ForestHealth.Rd R2BayesX/man/GAMart.Rd R2BayesX/man/GCV.Rd R2BayesX/man/GRstats.Rd R2BayesX/man/GermanyBnd.Rd R2BayesX/man/MunichBnd.Rd R2BayesX/man/R2BayesX-package.Rd R2BayesX/man/ZambiaBnd.Rd R2BayesX/man/ZambiaNutrition.Rd R2BayesX/man/add.neighbor.Rd R2BayesX/man/bayesx.Rd R2BayesX/man/bayesx.construct.Rd R2BayesX/man/bayesx.control.Rd R2BayesX/man/bayesx.term.options.Rd R2BayesX/man/bnd2gra.Rd R2BayesX/man/colorlegend.Rd R2BayesX/man/cprob.Rd R2BayesX/man/delete.neighbor.Rd R2BayesX/man/fitted.bayesx.Rd R2BayesX/man/get.neighbor.Rd R2BayesX/man/getscript.Rd R2BayesX/man/logfile.Rd R2BayesX/man/nbAndGraConversion.Rd R2BayesX/man/parse.bayesx.input.Rd R2BayesX/man/plot.bayesx.Rd R2BayesX/man/plot2d.Rd R2BayesX/man/plot3d.Rd R2BayesX/man/plotblock.Rd R2BayesX/man/plotmap.Rd R2BayesX/man/plotsamples.Rd R2BayesX/man/predict.bayesx.Rd R2BayesX/man/prgfile.Rd R2BayesX/man/read.bayesx.output.Rd R2BayesX/man/read.bnd.Rd R2BayesX/man/read.gra.Rd R2BayesX/man/runtime.Rd R2BayesX/man/samples.Rd R2BayesX/man/shp2bnd.Rd R2BayesX/man/sliceplot.Rd R2BayesX/man/spAndBndConversion.Rd R2BayesX/man/summary.bayesx.Rd R2BayesX/man/sx.Rd R2BayesX/man/term.freqs.Rd R2BayesX/man/write.bayesx.input.Rd R2BayesX/man/write.bnd.Rd R2BayesX/man/write.gra.Rd
R2BayesX/src
R2BayesX/src/bayesx.c

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