PlotFunction: "PlotFunction"

Description Usage Arguments

View source: R/Functions.R

Description

The PlotFunction produces three plots concerning a specific exon and its corresponding gene.

Usage

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PlotFunction(GeneID = NULL, ExonID = NULL, Data, REIDS_Output,
  GeneLevelData = NULL, ExonLevelData = NULL, FIRMA_Data = NULL, groups,
  plottype = "new", location)

Arguments

GeneID

The gene ID of the gene of interest.

ExonID

The exon ID of the exon of interest.

Data

The processed data as returned by DataProcessing. This is were the observed probe intensities will be retrieved.

REIDS_Output

The output of the REIDS model. This is were the array scores will be retrieved.

GeneLevelData

The gene level summarized data to retrieve the gene level values.

ExonLevelData

The exon level summarized data to retrieve the exon level values.

FIRMA_Data

The output of the FIRMA model to retrieve the FIRMA scores of the samples.

groups

The groups of interest in the data.

plottype

Should be one of "pdf","new" or "sweave". If "pdf", a location should be provided in "location" and the figure is saved there. If "new" a new graphic device is opened and if "sweave", the figure is made compatible to appear in a sweave or knitr document, i.e. no new device is opened and the plot appears in the current device or document.

location

If plottype is "pdf", a location should be provided in "location" and the figure is saved here. the location should include the name of the plot.


REIDS documentation built on May 2, 2019, 4:45 p.m.