PlotFunction: "PlotFunction"

In REIDS: Random Effects for the Identification of Differential Splicing

Description

The PlotFunction produces three plots concerning a specific exon and its corresponding gene.

Usage

PlotFunction(GeneID = NULL, ExonID = NULL, Data, REIDS_Output,
  GeneLevelData = NULL, ExonLevelData = NULL, FIRMA_Data = NULL, groups,
  plottype = "new", location)

Arguments

GeneID	The gene ID of the gene of interest.
ExonID	The exon ID of the exon of interest.
Data	The processed data as returned by DataProcessing. This is were the observed probe intensities will be retrieved.
REIDS_Output	The output of the REIDS model. This is were the array scores will be retrieved.
GeneLevelData	The gene level summarized data to retrieve the gene level values.
ExonLevelData	The exon level summarized data to retrieve the exon level values.
FIRMA_Data	The output of the FIRMA model to retrieve the FIRMA scores of the samples.
groups	The groups of interest in the data.
plottype	Should be one of "pdf","new" or "sweave". If "pdf", a location should be provided in "location" and the figure is saved there. If "new" a new graphic device is opened and if "sweave", the figure is made compatible to appear in a sweave or knitr document, i.e. no new device is opened and the plot appears in the current device or document.
location	If plottype is "pdf", a location should be provided in "location" and the figure is saved here. the location should include the name of the plot.

REIDS documentation built on May 2, 2019, 4:45 p.m.