ver.matRmacoqui: Friendly visualization of RMacoqui outputs

In RMacoqui: Identifying and describing chorotypes based on similarity between species distributions

Description

This function allows a user-friendly visualization of objects resulting from functions macoqui, codelocCorot, fuzzy.Clusters and locCorotGrupos. The results listed in these objects are visualized as tables, and are easily exportable as .txt files.

Usage

ver.matRmacoqui(x)

Arguments

x	object resulting from function macoqui or from function fuzzy.Clusters.

Value

The returned output is a Tcl/Tk interface (which appears in a separate window) with a menu of links.

The following links are provided in the menu after ver.matRmacoqui(macoquires):

Similarity Initial Order
Similarity Cluster Order
Significant Similarity
Intermediate MACOQUI Parameters
MACOQUI Parameters
Chorotype Report
Degree of Membership in Chorotypes
Intermediate Fuzzy Parameters
Cardinality Intersection-Union between Chorotypes
Fuzzy Parameters
Chorotypes in Localities

The following links are provided in the menu after ver.matRmacoqui(fuzzyres):

Cluster Description
Species Presences in Clusters
Degree of Membership in Clusters
Intermediate Fuzzy Parameters
Cardinality Intersection-Union between Clusters
Fuzzy Parameters
Clusters in Localities

Note

Before running ver.matRmacoqui, the tcltk package must be installed and loaded.

Author(s)

Jesus Olivero, Ramon Hidalgo, Ana L. Marquez, A. Marcia Barbosa, Raimundo Real

See Also

macoqui, locCorot, fuzzy.Clusters, locCorotGrupos

Examples

## ver.matRmacoqui for 'macoqui', not including link to 'Chorotypes in Localities':

data(amphib)
macoquires <- macoqui(amphib)
ver.matRmacoqui(macoquires) 


## ver.matRmacoqui for 'macoqui', including link to 'Chorotypes in Localities':

data(amphib)
macoquires <- macoqui(amphib)
locs <- locCorot(macoquires)
ver.matRmacoqui(locs) 


## ver.matRmacoqui for 'fuzzy.Clusters', not including link to 'Chorotypes in Localities':

data(amphib)
macoquires <- macoqui(amphib)
grupos <- c(12,1,12,2,13,1,13,2,15,1,10,1,10,2,17,2)
fuzzyres <- fuzzy.Clusters(macoquires, grupos)
ver.matRmacoqui(fuzzyres)


## ver.matRmacoqui for 'fuzzy.Clusters', including link to 'Chorotypes in Localities':

data(amphib)
macoquires <- macoqui(amphib)
grupos <- c(12,1,12,2,13,1,13,2,15,1,10,1,10,2,17,2)
fuzzyres <- fuzzy.Clusters(macoquires, grupos)
fuzzylocs <- locCorotGrupos(fuzzyres, grupos)
ver.matRmacoqui(fuzzylocs)

RMacoqui documentation built on May 2, 2019, 5:37 p.m.