Standard/"basic" NONMEM 7 individual problem

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Description

This class holds the results from an individual NONMEM 7 problem (not an entire control file) that has no $SIM step.)

Objects from the Class

Individual objects of this class are not meant to be instantiated on their own, but are created when loading a NONMEM run via importNm.

Slots

parameterIterations:

Currently unused

objectiveFinal:

Vector of objective function final values (one for each method)

methodInfo:

$EST statement contents partially parsed into a matrix

methodNames:

character vector of full method names (from report file)

thetaInitial:

List of theta initial value vectors, one element for each method used

sigmaInitial:

List of sigma initial value vectors, one element for each method used

omegaInitial:

List of omega initial value vectors, one element for each method used

thetaFinal:

List of theta final estimate vectors, one element for each method used

sigmaFinal:

List of sigma final estimate vectors, one element for each method used

omegaFinal:

List of omega final estimate vectors, one element for each method used

thetaStderr:

List of theta standard error vectors, one element for each method used

sigmaStderr:

List of sigma standard error matrices, one element for each method used

omegaStderr:

List of omega standard error matrices, one element for each method used

ETAShrinkage:

Matrix of ETA shrinkages, one row for each method

EPSShrinkage:

Matrix of EPS shrinkages, one row for each method

parameterCovMatrices:

List of parameter covariance matrices, one for each method

parameterCorMatrices:

List of parameter correlation matrices, one for each method

minInfo:

Character vector holding the first line of the termination status for each method

Extends

Class "NMProblem", directly.

Methods

addDerivedCategorical

signature(obj = "NMBasicModelNM7"): Create user-defined categorical variables

getMethodNames

signature(obj = "NMBasicModelNM7"): Retrieves the estimation method names

getObjective

signature(obj = "NMBasicModelNM7") Extracts objective function value.

getEstimateCov

signature(obj = "NMBasicModelNM7"): Extracts the covariance matrix and optionally the correlation matrix of the estimators for this problem.

getOmegas

signature(obj = "NMBasicModelNM7"): Retrieves the omega estimates from the problem and chosen method number

getSigmas

signature(obj = "NMBasicModelNM7"): Retrieves the sigma estimates from the problem and chosen method number

getThetas

signature(obj = "NMBasicModelNM7"): Retrieves the theta estimates from the problem and chosen method number

imposeCategoryFormat

signature(obj = "NMBasicModelNM7"): Coerces variables to categories

nmData

signature(obj = "NMBasicModelNM7"): Extracts the input and output data from the problem

show

signature(object = "NMBasicModelNM7"): ...

Author(s)

Mango Solutions

See Also

NMBasicModel, NMSimModelNM7

Examples

1
showClass("NMBasicModelNM7")

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