Reol: R interface to the Encyclopedia of Life

An R interface to the Encyclopedia of Life API. Includes functions for downloading and extracting information off the EOL pages.

Author
Barb Banbury <darwinthesun@gmail.com>, Brian O'Meara <bomeara@utk.edu>
Date of publication
2014-04-18 19:45:57
Maintainer
Barb Banbury <darwinthesun@gmail.com>
License
GPL (>= 2)
Version
1.55

View on R-Forge

Man pages

APItaxon
Encode Taxon Name
CollectDataforWeb
Collect Data from EOL Pages for Website
CombineHierarchyInfo
Combine Hierarchy Info
DataObjectOverview
Data Object Information
DownloadHierarchy
Download Hierarchy Content From Contributors
DownloadSearchedTaxa
Download Page Content From EOL
FirstTwo
Get Binomial Nomenclature
GatherProviderDataFrame
Gather EOL Provider Information
GatherSynonyms
Gathers A List Of Taxonomic Synonyms
GetCommonNames
Gather Common Name Information
GetHierID
Gets Hierarchy page ID
GetIUCNStat
Gather IUCN Status for EOL Pages
GetReferences
Gather EOL References
GetRichnessScores
Gather EOL Richness Score Information
MakeEdgeLabels
Creates Edge Labels for Hierarchy Trees
MakeHierarchyTree
Creates Hierarchical Trees
MatchHierPageToEOLdata
Match Data Functions
MatchTaxatoEOLID
Matches Taxa to and eolID
MyEOLs
Example EOL and Hierarchy pages
OneFileHierarchy
Creates A Taxonomic Hierarchy for a single Taxon
PageProcessing
Process XML Data into tree format
PingAPI
Test the working order of the EOL API
Reol-package
Reol
RepeatDataToDrop
Repeat Data To Drop
subsetDataForHierTrees
Subset Data For Hier Trees

Files in this package

Reol/DESCRIPTION
Reol/NAMESPACE
Reol/R
Reol/R/CollectDataforWeb.R
Reol/R/DataObjectOverview.R
Reol/R/DownloadEOLpages.R
Reol/R/DownloadHierarchy.R
Reol/R/DownloadSearchedTaxa.R
Reol/R/FirstTwo.R
Reol/R/GatherProviderDataFrame.R
Reol/R/GatherSynonyms.R
Reol/R/GetCommonNames.R
Reol/R/GetHierID.R
Reol/R/GetIUCNStat.R
Reol/R/GetReferences.R
Reol/R/GetRichnessScores.R
Reol/R/MakeEdgeLabels.R
Reol/R/MakeHierarchyTree.R
Reol/R/MatchHierPageToEOLdata.R
Reol/R/OneFileHierarchy.R
Reol/R/PageProcessing.R
Reol/R/PingAPI.R
Reol/R/TaxonChildren.R
Reol/data
Reol/data/MyEOLs.rda
Reol/data/MyHiers.rda
Reol/inst
Reol/inst/doc
Reol/inst/doc/ReolUserManual.pdf
Reol/inst/extdata
Reol/inst/extdata/Asparagales.tre
Reol/inst/tests
Reol/inst/tests/testAPI1.R
Reol/inst/tests/testAPI2.R
Reol/inst/tests/testPing.R
Reol/man
Reol/man/APItaxon.Rd
Reol/man/CollectDataforWeb.Rd
Reol/man/CombineHierarchyInfo.Rd
Reol/man/DataObjectOverview.Rd
Reol/man/DownloadHierarchy.Rd
Reol/man/DownloadSearchedTaxa.Rd
Reol/man/FirstTwo.Rd
Reol/man/GatherProviderDataFrame.Rd
Reol/man/GatherSynonyms.Rd
Reol/man/GetCommonNames.Rd
Reol/man/GetHierID.Rd
Reol/man/GetIUCNStat.Rd
Reol/man/GetReferences.Rd
Reol/man/GetRichnessScores.Rd
Reol/man/MakeEdgeLabels.Rd
Reol/man/MakeHierarchyTree.Rd
Reol/man/MatchHierPageToEOLdata.Rd
Reol/man/MatchTaxatoEOLID.Rd
Reol/man/MyEOLs.Rd
Reol/man/OneFileHierarchy.Rd
Reol/man/PageProcessing.Rd
Reol/man/PingAPI.Rd
Reol/man/Reol-package.Rd
Reol/man/RepeatDataToDrop.Rd
Reol/man/TaxonChildren.rd
Reol/man/subsetDataForHierTrees.Rd
Reol/vignettes
Reol/vignettes/ReolUserManual-014.pdf
Reol/vignettes/ReolUserManual-015.pdf
Reol/vignettes/ReolUserManual-017.pdf
Reol/vignettes/ReolUserManual-018.pdf
Reol/vignettes/ReolUserManual.pdf
Reol/vignettes/ReolUserManual.tex