Compute the discrepancy from the pairwise dissimilarities between objects. The discrepancy is a measure of dispersion of the set of objects.
1 |
diss |
A dissimilarity matrix or a |
weights |
optional numerical vector containing weights. |
squared |
Logical. If |
The discrepancy is an extension of the concept of variance to any kind of objects for which we can compute pairwise dissimilarities. The discrepancy s^2 is defined as:
s^2=(1/(2n^2)) * sum sum d_ij
Mathematical ground: In the Euclidean case, the sum of squares can be expressed as:
SS= sum (y_i - y_mean)^2=(1/(2n)) * sum sum (y_i - y_j)^2
The concept of discrepancy generalizes the equation by allowing to replace the (y_i - y_j)^2 term with any measure of dissimilarity d_{ij}.
The discrepancy.
Matthias Studer (with Gilbert Ritschard for the help page)
Studer, M., G. Ritschard, A. Gabadinho and N. S. Müller (2011). Discrepancy analysis of state sequences, Sociological Methods and Research, Vol. 40(3), 471-510.
Studer, M., G. Ritschard, A. Gabadinho and N. S. Müller (2010) Discrepancy analysis of complex objects using dissimilarities. In F. Guillet, G. Ritschard, D. A. Zighed and H. Briand (Eds.), Advances in Knowledge Discovery and Management, Studies in Computational Intelligence, Volume 292, pp. 3-19. Berlin: Springer.
Studer, M., G. Ritschard, A. Gabadinho and N. S. Müller (2009) Analyse de dissimilarités par arbre d'induction. In EGC 2009, Revue des Nouvelles Technologies de l'Information, Vol. E-15, pp. 7-18.
Anderson, M. J. (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecology 26, 32-46.
Batagelj, V. (1988) Generalized ward and related clustering problems. In H. Bock (Ed.), Classification and related methods of data analysis, Amsterdam: North-Holland, pp. 67-74.
dissassoc
to test association between objects represented by their dissimilarities and a covariate.
disstree
for an induction tree analyse of objects characterized by a dissimilarity matrix.
disscenter
to compute the distance of each object to its group center from pairwise dissimilarities.
dissmfac
to perform multi-factor analysis of variance from pairwise dissimilarities.
1 2 3 4 5 6 7 8 9 |
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.
All documentation is copyright its authors; we didn't write any of that.