Files in WaveSeqR
A Wavelet-based Method for ChIP-Seq peak calling
DESCRIPTION
NAMESPACE
inst/CITATION
inst/doc/waveSeqR.Rnw
inst/doc/waveSeqR.pdf
inst/extdata/rxnoip_valouev2008_chr22-15m-30m-pad.graph
inst/extdata/gabp_valouev2008_chr22-15m-30m-pad.graph
inst/extdata/thresdist/thres_std_morlet_GABP_valouev_chr22_control.txt
inst/extdata/thresdist/thres_avg_morlet_GABP_valouev_chr22_nocontrol.txt
inst/extdata/thresdist/thres_avg_morlet_GABP_valouev_chr22_control.txt
inst/extdata/thresdist/thres_std_morlet_GABP_valouev_chr22_nocontrol.txt
inst/extdata/padgraph/chrlist_GABP_valouev_chr22_nocontrol.txt
inst/extdata/padgraph/chrlist_GABP_valouev_chr22_control.txt
vignettes/waveSeqR.Rnw
exec/bed2graph.pl
exec/pad_graph.pl
exec/get_chr_info.pl
exec/rem_dup_reads.pl
R/getPeakReads_batch.R
R/waveletThresholding.R
R/compareWithControl.R
R/getConfidenceInterval.R
R/gapDiagnostic.R
R/noControlFDR.R
R/getPeakReads.R
R/getThresholdDistribution.R
R/randomizedBackground.R
R/checkFolderHierarchy.R
R/preprocess.R
R/waveseq.R
R/setenvar.R
R/gapPeaks.R
R/controlFDR.R
man/noControlFDR.Rd
man/waveseq.Rd
man/compareWithControl.Rd
man/gapDiagnostic.Rd
man/randomizedBackground.Rd
man/getThresholdDistribution.Rd
man/waveletThresholding.Rd
man/checkFolderHierarchy.Rd
man/getConfidenceInterval.Rd
man/gabp_peaks.Rd
man/preprocess.Rd
man/gapPeaks.Rd
man/controlFDR.Rd
man/getPeakReads.Rd
man/getPeakReads_batch.Rd
man/WaveSeqR-package.Rd
build/vignette.rds
data/gabp_peaks.rda
