Files in WaveSeqR
A Wavelet-based Method for ChIP-Seq peak calling

DESCRIPTION
NAMESPACE
R
R/checkFolderHierarchy.R R/compareWithControl.R R/controlFDR.R R/gapDiagnostic.R R/gapPeaks.R R/getConfidenceInterval.R R/getPeakReads.R R/getPeakReads_batch.R R/getThresholdDistribution.R R/noControlFDR.R R/preprocess.R R/randomizedBackground.R R/setenvar.R R/waveletThresholding.R R/waveseq.R
build
build/vignette.rds
data
data/gabp_peaks.rda
exec
exec/bed2graph.pl
exec/get_chr_info.pl
exec/pad_graph.pl
exec/rem_dup_reads.pl
inst
inst/CITATION
inst/doc
inst/doc/waveSeqR.Rnw
inst/doc/waveSeqR.pdf
inst/extdata
inst/extdata/gabp_valouev2008_chr22-15m-30m-pad.graph
inst/extdata/padgraph
inst/extdata/padgraph/chrlist_GABP_valouev_chr22_control.txt
inst/extdata/padgraph/chrlist_GABP_valouev_chr22_nocontrol.txt
inst/extdata/rxnoip_valouev2008_chr22-15m-30m-pad.graph
inst/extdata/thresdist
inst/extdata/thresdist/thres_avg_morlet_GABP_valouev_chr22_control.txt
inst/extdata/thresdist/thres_avg_morlet_GABP_valouev_chr22_nocontrol.txt
inst/extdata/thresdist/thres_std_morlet_GABP_valouev_chr22_control.txt
inst/extdata/thresdist/thres_std_morlet_GABP_valouev_chr22_nocontrol.txt
man
man/WaveSeqR-package.Rd man/checkFolderHierarchy.Rd man/compareWithControl.Rd man/controlFDR.Rd man/gabp_peaks.Rd man/gapDiagnostic.Rd man/gapPeaks.Rd man/getConfidenceInterval.Rd man/getPeakReads.Rd man/getPeakReads_batch.Rd man/getThresholdDistribution.Rd man/noControlFDR.Rd man/preprocess.Rd man/randomizedBackground.Rd man/waveletThresholding.Rd man/waveseq.Rd
vignettes
vignettes/waveSeqR.Rnw
WaveSeqR documentation built on May 31, 2017, 3:08 a.m.