Description Usage Format Source References Examples
Data frame containing the list of peaks detected by WaveSeqR in a published GABP ChIP-Seq data set. The data corresponds to the genomic region chr22:15000000-30000000 of the hg18 version of the human genome. Mother function was 'morlet' and gap size was 0.
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A data frame with 1590 observations on the following 8 variables.
chr
Chromosome name
start
Start position
end
End position
chip_reads
Number of ChIP reads
control_reads
Number of control reads
fold_change
Fold-change ChIP vs control
p.value
P-value
adj.p.value
Adjusted p-value
http://mendel.stanford.edu/sidowlab/downloads/quest/
Valouev, A. et al (2008) Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.. Nat Methods. 2008 Sep;5(9):829-34.
1 2 | data(gabp_peaks)
## maybe str(gabp_peaks) ; plot(gabp_peaks) ...
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