Man pages for WaveSeqR
A Wavelet-based Method for ChIP-Seq peak calling
| checkFolderHierarchy | Check folder organization |
| compareWithControl | Compare ChIP to Control |
| controlFDR | FDR Estimation with Control |
| gabp_peaks | Peak Calling results on GABP data |
| gapDiagnostic | Function to Select Suitable Gap Size |
| gapPeaks | Concatenate Peaks within a User-specified Distance |
| getConfidenceInterval | Get confidence intervals of Wavelet coefficients after Monte... |
| getPeakReads | Get Reads Within a List of Specified Locations |
| getPeakReads_batch | Get Reads Within a List of Specified Locations in Batch |
| getThresholdDistribution | Wavelet Threshold Estimation |
| noControlFDR | FDR Estimation without Control |
| preprocess | Data preprocessing |
| randomizedBackground | Randomized Background Estimation |
| waveletThresholding | Perform Wavelet CWT Thresholding |
| waveseq | Run WaveSeq Analysis Pipeline |
| WaveSeqR-package | WaveSeq: A Wavelet-based Algorithm for Detecting Histone... |
