WayFindR: Computing Graph Structures on WikiPathways

Converts pathways from 'WikiPathways' GPML format or 'KEGG' KGML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).

Package details

AuthorKevin R. Coombes [aut, cre], Polina Bombina [aut]
MaintainerKevin R. Coombes <krc@silicovore.com>
URL http://oompa.r-forge.r-project.org/
Package repositoryView on R-Forge
Installation Install the latest version of this package by entering the following in R:
install.packages("WayFindR", repos="http://R-Forge.R-project.org")

Try the WayFindR package in your browser

Any scripts or data that you put into this service are public.

WayFindR documentation built on July 25, 2024, 3:01 a.m.