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# R package 'abrem'
# Abernethy Reliability Methods
# Implementations of lifetime data analysis methods described in
# 'The New Weibull Handbook, Fifth edition' by Dr. Robert B. Abernethy.
# April 2014, Jurgen Symynck
# Copyright 2014, Jurgen Symynck
#
# For more info, visit http://www.openreliability.org/
#
# For the latest version of this file, check the Subversion repository at
# http://r-forge.r-project.org/projects/abernethy/
#
# Disclaimer:
# The author is not affiliated with Dr. Abernethy or Wes Fulton - CEO of
# Fulton Findings(TM) and author of the software package SuperSMITH
#-------------------------------------------------------------------------------
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
# +-----------------------------------+
# | execute this software with R: |
# | http://www.r-project.org/ |
# +-----------------------------------+
plotSingleConfBound <- function(blc,opafit,opadatathreshold,...){
if(!is.null(blc$options)){
opaconf <- modifyList(opafit,blc$options)
}else{opaconf <- opafit}
opaconf <- modifyList(opaconf,list(...))
if(opaconf$is.plot.cb){
t0 <- 0
# if(is.logical(opafit$threshold))if(opafit$threshold)
# warning ("opafit$threshold is a logical value but numeric value was expected. Proceeding...")
# if(is.numeric(opafit$threshold))t0 <- opafit$threshold
# # efffectively ignore any threshold argument set at the conf level
if(is.logical(opadatathreshold))if(opafit$threshold)
warning ("opadata$threshold is a logical value but numeric value was expected. Proceeding...")
if(is.numeric(opadatathreshold))t0 <- opadatathreshold
# efffectively ignore any threshold argument set at the conf level
if(!is.null(blc$bounds$Datum))
lines(y=F0inv(blc$bounds$unrel,opaconf$log),
x=blc$bounds$Datum-t0,
col=opaconf$col,lwd=1,lty=2)
if(!is.null(blc$bounds$Lower))
lines(y=F0inv(blc$bounds$unrel,opaconf$log),
x=blc$bounds$Lower-t0,col=opaconf$col,
lwd=opaconf$lwd,lty=opaconf$lty)
if(!is.null(blc$bounds$Upper))
lines(y=F0inv(blc$bounds$unrel,opaconf$log),
x=blc$bounds$Upper-t0,col=opaconf$col,
lwd=opaconf$lwd,lty=opaconf$lty)
}
}
plotConfsInFit <- function(fit,opadata,...){
arg <- list(...)
if(!is.null(fit$conf$blives)){
if(!is.null(fit$options)){
opafit <- modifyList(opadata,fit$options)
}else{opafit <- opadata}
lapply(fit$conf$blives,plotSingleConfBound,opafit=opafit,opadatathreshold=opadata$threshold,...)
}
# else{if(arg$v >= 1)message(match.call()[[1]],
# ": This fit contains no confidence calculations for B-lives.")}
}
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