statico: STATIS and Co-Inertia : Analysis of a series of paired...

In ade4: Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences

Description

Does the analysis of a series of pairs of ecological tables. This function uses Partial Triadic Analysis (pta) and ktab.match2ktabs to do the computations.

Usage

statico(KTX, KTY, scannf = TRUE)

Arguments

KTX	an objet of class ktab
KTY	an objet of class ktab
scannf	a logical value indicating whether the eigenvalues bar plot should be displayed

Details

This function takes 2 ktabs and crosses each pair of tables of these ktabs with the function ktab.match2ktabs. It then does a partial triadic analysis on this new ktab with pta.

Value

a list of class ktab, subclass kcoinertia. See ktab

WARNING

IMPORTANT : KTX and KTY must have the same k-tables structure, the same number of columns, and the same column weights.

Author(s)

Jean Thioulouse [e-mail]

References

Thioulouse J. (2011). Simultaneous analysis of a sequence of paired ecological tables: a comparison of several methods. Annals of Applied Statistics, 5, 2300-2325. Thioulouse J., Simier M. and Chessel D. (2004). Simultaneous analysis of a sequence of paired ecological tables. Ecology 85, 272-283. Simier, M., Blanc L., Pellegrin F., and Nandris D. (1999). Approche simultanée de K couples de tableaux : Application a l'étude des relations pathologie végétale - environnement. Revue de Statistique Appliquée, 47, 31-46.

Examples

data(meau)
wit1 <- withinpca(meau$env, meau$design$season, scan = FALSE, scal = "total")
spepca <- dudi.pca(meau$spe, scale = FALSE, scan = FALSE, nf = 2)
wit2 <- wca(spepca, meau$design$season, scan = FALSE, nf = 2)
kta1 <- ktab.within(wit1, colnames = rep(c("S1","S2","S3","S4","S5","S6"), 4))
kta2 <- ktab.within(wit2, colnames = rep(c("S1","S2","S3","S4","S5","S6"), 4))
statico1 <- statico(kta1, kta2, scan = FALSE)
plot(statico1)
kplot(statico1)

Example output

ade4 documentation built on May 2, 2019, 5:50 p.m.