carni19: Phylogeny and quantative trait of carnivora

In adephylo: adephylo: exploratory analyses for the phylogenetic comparative method.

Description

This data set describes the phylogeny of carnivora as reported by Diniz-Filho et al. (1998). It also gives the body mass of these 19 species.

Usage

data(carni19)

Format

carni19 is a list containing the 2 following objects :

tre

is a character string giving the phylogenetic tree in Newick format.

bm

is a numeric vector which values correspond to the body mass of the 19 species (log scale).

Note

This dataset replaces the former version in ade4.

Source

Diniz-Filho, J. A. F., de Sant'Ana, C.E.R. and Bini, L.M. (1998) An eigenvector method for estimating phylogenetic inertia. Evolution, 52, 1247–1262.

Examples

## Not run: 
if(require(ape) && require(phylobase)){

data(carni19)
tre <- read.tree(text=carni19$tre)
x <- phylo4d(tre, data.frame(carni19$bm))
table.phylo4d(x, ratio=.5, center=FALSE)
}

## End(Not run)

Example output

Loading required package: ade4
Loading required package: ape
Loading required package: phylobase

Attaching package: 'phylobase'

The following object is masked from 'package:ape':

    edges

Warning message:
In table.phylo4d(x, ratio = 0.5, center = FALSE) :
  There may not be enough room left to plot data; you may consider reducing ratio.tree or cex.label.

adephylo documentation built on May 2, 2019, 4:54 p.m.