Description Usage Arguments Value Author(s) See Also Examples
The function listDD
lists the direct descendants from each node
of a tree. The tree can be of class phylo
,
phylo4 or phylo4d.
1 |
x |
A tree of class |
nameBy |
a character string indicating whether the returned list must be named by node labels ("label") or by node numbers ("number"). |
A list whose components are vectors of named nodes (or tips) for a given internal node.
Thibaut Jombart tjombart@imperial.ac.uk
listTips
which lists the tips descending from
each node.
treePart
which defines partitions of tips
according to the tree topology.
1 2 3 4 5 6 |
Loading required package: ade4
Registered S3 method overwritten by 'spdep':
method from
plot.mst ape
Loading required package: ape
Loading required package: phylobase
Attaching package: ‘phylobase’
The following object is masked from ‘package:ape’:
edges
$`21`
<NA> <NA>
22 27
$`22`
<NA> <NA>
23 25
$`23`
t4 <NA>
1 24
$`24`
t13 t18
2 3
$`25`
t17 <NA>
6 26
$`26`
t6 t12
4 5
$`27`
<NA> <NA>
28 32
$`28`
<NA> <NA>
29 31
$`29`
t5 <NA>
7 30
$`30`
t1 t2
8 9
$`31`
t19 t14
10 11
$`32`
t8 <NA>
20 33
$`33`
<NA> <NA>
34 37
$`34`
t10 <NA>
15 35
$`35`
t15 <NA>
14 36
$`36`
t7 t20
12 13
$`37`
<NA> <NA>
38 39
$`38`
t9 t3
16 17
$`39`
t11 t16
18 19
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