aqp: Algorithms for Quantitative Pedology

A collection of algorithms related to modeling of soil resources, soil classification, soil profile aggregation, and visualization.

AuthorDylan Beaudette <debeaudette@ucdavis.edu>, Pierre Roudier <roudierp@landcareresearch.co.nz>
Date of publication2016-03-22 16:04:47
MaintainerDylan Beaudette <debeaudette@ucdavis.edu>
LicenseGPL (>= 2)
Version1.9.9
http://aqp.r-forge.r-project.org/

View on R-Forge

Man pages

addBracket: Add Depth Brackets

addVolumeFraction: Symbolize Volume Fraction on a Soil Profile Collection Plot

aggregateColor: Summarize Soil Colors

aggregateSoilDepth: Probabalistic Estimation of Soil Depth

amarillo: Amarillo Soils

aqp-package: Algorithms for Quantitative Pedology

ca630: Soil Data from the Central Sierra Nevada Region of California

estimateSoilDepth: Estimate Soil Depth

evalGenHZ: Evaluate Generalized Horizon Labels

evalMissingData: Evaluate Missing Data

f.noise: Example Objective Function for Full-Pattern Matching

generalize.hz: Generalize Horizon Names

get.ml.hz: Determine ML Horizon Boundaries

getSoilDepthClass: Generate Soil Depth Class Matrix

groupedProfilePlot: Grouped Soil Profile Plot

guessGenHzLevels: Guess Appropriate Ordering for Generalized Horizon Labels

hzDistinctnessCodeToOffset: Convert Horizon Distinctness Codes

hzTransitionProbabilities: Horizon Transition Probabilities

missingDataGrid: Missing Data Grid

munsell: Munsell-RGB Lookup Table for Common Soil Colors

munsell2rgb: Convert Munsell Notation to and from RGB color coordinates

panel.depth_function: Lattice Panel Function for Soil Profiles

plot_distance_graph: Between Individual Distance Plot

plotMultipleSPC: Plot Multiple SoilProfileCollection Objects

profileApply-methods: Apply a function to soil profiles within a...

profile_compare-methods: Numerical Soil Profile Comparison

profileGroupLabels: Soil Profile Group Labels

random_profile: Random Profile

resample.twotheta: Resample an XRD Pattern

rruff.sample: Sample XRD Patterns

sim: Simulate Soil Profiles

soilColorSignature: Soil Profile Color Signatures

SoilProfileCollection-class: SoilProfileCollection Class

sp1: Soil Profile Data Example 1

sp2: Honcut Creek Soil Profile Data

sp3: Soil Profile Data Example 3

sp4: Soil Chemical Data from Serpentinitic Soils of California

sp5: Sample Soil Database #5

SPC-plotting: Profile Plot

SPC-slab-methods: Slab-Wise Aggregation of SoilProfileCollection Objects

SPC-slice-methods: Slicing of SoilProfilecollection Objects

SPC-unique-methods: Get Indices to Unique Soil Profiles Within a Collection

SPC-utils: Getters, Setters, and Utility Methods for...

subsetProfiles-methods: Subset SoilProfileCollection Objects.

test_hz_logic: Test Horizon Logic

texture.triangle.low.rv.high: Soil Texture Low-RV-High as Defined by Quantiles

unroll: Unroll Genetic Horizons

Files in this package

aqp/.Rinstignore
aqp/DESCRIPTION
aqp/NAMESPACE
aqp/NEWS
aqp/R
aqp/R/AAAA.R aqp/R/Class-SoilProfileCollection.R aqp/R/SoilProfileCollection-coercion.R aqp/R/SoilProfileCollection-iterators.R aqp/R/SoilProfileCollection-methods.R aqp/R/SoilProfileCollection-slice-methods.R aqp/R/SoilProfileCollection-spatial.R aqp/R/addVolumeFraction.R aqp/R/aggregateColor.R aqp/R/aggregateSoilDepth.R aqp/R/estimateSoilDepth.R aqp/R/evalGenHz.R aqp/R/evalMissingData.R aqp/R/f.noise.R aqp/R/generalize.hz.R aqp/R/get.ml.hz.R aqp/R/getSoilDepthClass.R aqp/R/guessGenHzLevels.R aqp/R/hzTransitionProbabilities.R aqp/R/make.segments.R aqp/R/missingDataGrid.R aqp/R/mostLikelyHzSequence.R aqp/R/munsell2rgb.R aqp/R/panel.depth_function.R aqp/R/plot_distance_graph.R aqp/R/prepanel.depth_function.R aqp/R/profile_compare.R aqp/R/profile_plot.R aqp/R/random_profile.R aqp/R/resample.twotheta.R aqp/R/setters.R aqp/R/sim.R aqp/R/slab.R aqp/R/soilColorSignature.R aqp/R/soil_slotting.R aqp/R/test_hz_logic.R aqp/R/texture-low-rv-high.R aqp/R/unroll.R aqp/R/zzz.R
aqp/TODO
aqp/data
aqp/data/amarillo.rda
aqp/data/ca630.rda
aqp/data/munsell.rda
aqp/data/rruff.sample.rda
aqp/data/sp1.rda
aqp/data/sp2.rda
aqp/data/sp3.rda
aqp/data/sp4.rda
aqp/data/sp5.rda
aqp/demo
aqp/demo/00Index
aqp/demo/aqp.R
aqp/demo/slope_effect_hz_thickness.R
aqp/inst
aqp/inst/CITATION
aqp/man
aqp/man/SPC-plotting.Rd aqp/man/SPC-slab-methods.Rd aqp/man/SPC-slice-methods.Rd aqp/man/SPC-unique-methods.Rd aqp/man/SPC-utils.Rd aqp/man/SoilProfileCollection-class.Rd aqp/man/addBracket.Rd aqp/man/addVolumeFraction.Rd aqp/man/aggregateColor.Rd aqp/man/aggregateSoilDepth.Rd aqp/man/amarillo.Rd aqp/man/aqp-package.Rd aqp/man/ca630.Rd aqp/man/estimateSoilDepth.Rd aqp/man/evalGenHZ.Rd aqp/man/evalMissingData.Rd aqp/man/f.noise.Rd aqp/man/generalize.hz.Rd aqp/man/get.ml.hz.Rd aqp/man/getSoilDepthClass.Rd aqp/man/groupedProfilePlot.Rd aqp/man/guessGenHzLevels.Rd aqp/man/hzDistinctnessCodeToOffset.Rd aqp/man/hzTransitionProbabilities.Rd aqp/man/missingDataGrid.Rd aqp/man/munsell.Rd aqp/man/munsell2rgb.Rd aqp/man/panel.depth_function.Rd aqp/man/plotMultipleSPC.Rd aqp/man/plot_distance_graph.Rd aqp/man/profileApply-methods.Rd aqp/man/profileGroupLabels.Rd aqp/man/profile_compare-methods.Rd aqp/man/random_profile.Rd aqp/man/resample.twotheta.Rd aqp/man/rruff.sample.Rd aqp/man/sim.Rd aqp/man/soilColorSignature.Rd aqp/man/sp1.Rd aqp/man/sp2.Rd aqp/man/sp3.Rd aqp/man/sp4.Rd aqp/man/sp5.Rd aqp/man/subsetProfiles-methods.Rd aqp/man/test_hz_logic.Rd aqp/man/texture.triangle.low.rv.high.Rd aqp/man/unroll.Rd

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