aqp: Algorithms for Quantitative Pedology
Version 1.9.9

A collection of algorithms related to modeling of soil resources, soil classification, soil profile aggregation, and visualization.

AuthorDylan Beaudette <debeaudette@ucdavis.edu>, Pierre Roudier <roudierp@landcareresearch.co.nz>
Date of publication2016-03-22 16:04:47
MaintainerDylan Beaudette <debeaudette@ucdavis.edu>
LicenseGPL (>= 2)
Version1.9.9
URL http://aqp.r-forge.r-project.org/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("aqp", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

addVolumeFraction: Symbolize Volume Fraction on a Soil Profile Collection Plot
aqp-package: Algorithms for Quantitative Pedology
munsell: Munsell-RGB Lookup Table for Common Soil Colors
munsell2rgb: Convert Munsell Notation to and from RGB color coordinates
sp1: Soil Profile Data Example 1
sp2: Honcut Creek Soil Profile Data
sp4: Soil Chemical Data from Serpentinitic Soils of California
See all...

All man pages Function index File listing

Man pages

addBracket: Add Depth Brackets
addVolumeFraction: Symbolize Volume Fraction on a Soil Profile Collection Plot
aggregateColor: Summarize Soil Colors
aggregateSoilDepth: Probabalistic Estimation of Soil Depth
amarillo: Amarillo Soils
aqp-package: Algorithms for Quantitative Pedology
ca630: Soil Data from the Central Sierra Nevada Region of California
estimateSoilDepth: Estimate Soil Depth
evalGenHZ: Evaluate Generalized Horizon Labels
evalMissingData: Evaluate Missing Data
f.noise: Example Objective Function for Full-Pattern Matching
generalize.hz: Generalize Horizon Names
get.ml.hz: Determine ML Horizon Boundaries
getSoilDepthClass: Generate Soil Depth Class Matrix
groupedProfilePlot: Grouped Soil Profile Plot
guessGenHzLevels: Guess Appropriate Ordering for Generalized Horizon Labels
hzDistinctnessCodeToOffset: Convert Horizon Distinctness Codes
hzTransitionProbabilities: Horizon Transition Probabilities
missingDataGrid: Missing Data Grid
munsell: Munsell-RGB Lookup Table for Common Soil Colors
munsell2rgb: Convert Munsell Notation to and from RGB color coordinates
panel.depth_function: Lattice Panel Function for Soil Profiles
plot_distance_graph: Between Individual Distance Plot
plotMultipleSPC: Plot Multiple SoilProfileCollection Objects
profileApply-methods: Apply a function to soil profiles within a...
profile_compare-methods: Numerical Soil Profile Comparison
profileGroupLabels: Soil Profile Group Labels
random_profile: Random Profile
resample.twotheta: Resample an XRD Pattern
rruff.sample: Sample XRD Patterns
sim: Simulate Soil Profiles
soilColorSignature: Soil Profile Color Signatures
SoilProfileCollection-class: SoilProfileCollection Class
sp1: Soil Profile Data Example 1
sp2: Honcut Creek Soil Profile Data
sp3: Soil Profile Data Example 3
sp4: Soil Chemical Data from Serpentinitic Soils of California
sp5: Sample Soil Database #5
SPC-plotting: Profile Plot
SPC-slab-methods: Slab-Wise Aggregation of SoilProfileCollection Objects
SPC-slice-methods: Slicing of SoilProfilecollection Objects
SPC-unique-methods: Get Indices to Unique Soil Profiles Within a Collection
SPC-utils: Getters, Setters, and Utility Methods for...
subsetProfiles-methods: Subset SoilProfileCollection Objects.
test_hz_logic: Test Horizon Logic
texture.triangle.low.rv.high: Soil Texture Low-RV-High as Defined by Quantiles
unroll: Unroll Genetic Horizons

Functions

$,SoilProfileCollection-method Man page
$<-,SoilProfileCollection-method Man page
.lpp Man page
SoilProfileCollection Man page
SoilProfileCollection-class Man page
SoilProfileCollectionValidity Source code
SumDistanceList Source code
[,SoilProfileCollection-method Man page
addBracket Man page Source code
addDiagnosticBracket Man page Source code
addVolumeFraction Man page Source code
aggregateColor Man page Source code
aggregateSoilDepth Man page Source code
amarillo Man page
aqp Man page
aqp-package Man page
aqp.env Man page
ca630 Man page
coordinates,SoilProfileCollection-method Man page
coordinates<-,SoilProfileCollection-method Man page
createSiteFromHorizon Source code
depth_units Man page
depth_units,SoilProfileCollection-method Man page
depth_units<- Man page
depth_units<-,SoilProfileCollection-method Man page
depths<- Man page
depths<-,SoilProfileCollection-method Man page
depths<-,data.frame-method Man page
diagnostic_hz Man page
diagnostic_hz,SoilProfileCollection-method Man page
diagnostic_hz<- Man page
diagnostic_hz<-,SoilProfileCollection-method Man page
estimateSoilDepth Man page Source code
evalGenHZ Man page Source code
evalMissingData Man page Source code
f.noise Man page Source code
generalize.hz Man page Source code
genhzTableToAdjMat Man page Source code
get.ml.hz Man page Source code
get.slice Man page Source code
get.ssc.low.rv.high Source code
getMissingDataFraction Source code
getSoilDepthClass Man page Source code
groupedProfilePlot Man page Source code
guessGenHzLevels Man page Source code
horizonDepths Man page
horizonDepths,SoilProfileCollection-method Man page
horizonNames Man page
horizonNames,SoilProfileCollection-method Man page
horizonNames<- Man page
horizonNames<-,SoilProfileCollection-method Man page
horizons Man page
horizons,SoilProfileCollection-method Man page
horizons<- Man page
horizons<-,SoilProfileCollection-method Man page
hzDistinctnessCodeToOffset Man page Source code
hzTransitionProbabilities Man page Source code
idname Man page
idname,SoilProfileCollection-method Man page
length,SoilProfileCollection-method Man page
lpp Source code
make.segments Man page Source code
max,SoilProfileCollection-method Man page
metadata Man page
metadata,SoilProfileCollection-method Man page
metadata<- Man page
metadata<-,SoilProfileCollection-method Man page
min,SoilProfileCollection-method Man page
missingDataGrid Man page Source code
mostLikelyHzSequence Man page Source code
munsell Man page
munsell2rgb Man page Source code
names Man page
names,SoilProfileCollection-method Man page
nitSPCfromMF Source code
nrow,SoilProfileCollection-method Man page
onAttach Source code
panel.depth_function Man page Source code
parseMunsell Man page Source code
pc Man page Source code
pc.SPC Man page Source code
pigments.depths Source code
pigments.pam Source code
pigments.proportions Source code
plot Man page
plot,SoilProfileCollection,ANY-method Man page
plot,SoilProfileCollection-method Man page
plot.SoilProfileCollection Man page
plotMultipleSPC Man page Source code
plotSPC Man page Source code
plot_distance_graph Man page Source code
prepanel.depth_function Man page Source code
profileApply Man page
profileApply,SoilProfileCollection-method Man page
profileGroupLabels Man page Source code
profile_compare Man page
profile_compare,SoilProfileCollection-method Man page
profile_compare,data.frame-method Man page
profile_id Man page
profile_id,SoilProfileCollection-method Man page
proj4string,SoilProfileCollection-method Man page
proj4string<-,SoilProfileCollection,ANY-method Man page
random_profile Man page Source code
rbind.SoilProfileCollection Man page Source code
resample.twotheta Man page Source code
rgb2munsell Man page Source code
rruff.sample Man page
show,SoilProfileCollection-method Man page
sim Man page Source code
site Man page
site,SoilProfileCollection-method Man page
site<- Man page
site<-,SoilProfileCollection-method Man page
siteNames Man page
siteNames,SoilProfileCollection-method Man page
siteNames<- Man page
siteNames<-,SoilProfileCollection-method Man page
slab Man page Source code
slab,SoilProfileCollection-method Man page
slab.fun.factor.default Source code
slab.fun.numeric.default Source code
slab.fun.numeric.fast Source code
slab.fun.wtd.numeric.default Source code
slab2 Man page
slice Man page
slice,SoilProfileCollection-method Man page
slice.fast Man page Source code
soilColorSignature Man page Source code
sp1 Man page
sp2 Man page
sp3 Man page
sp4 Man page
sp5 Man page
subsetProfiles Man page
subsetProfiles,SoilProfileCollection-method Man page
test_hz_logic Man page Source code
texture.triangle.low.rv.high Man page Source code
unique Man page
unique,SoilProfileCollection-method Man page
uniqueSPC Man page Source code
unroll Man page Source code
volume2df Source code

Files

.Rinstignore
DESCRIPTION
NAMESPACE
NEWS
R
R/AAAA.R
R/Class-SoilProfileCollection.R
R/SoilProfileCollection-coercion.R
R/SoilProfileCollection-iterators.R
R/SoilProfileCollection-methods.R
R/SoilProfileCollection-slice-methods.R
R/SoilProfileCollection-spatial.R
R/addVolumeFraction.R
R/aggregateColor.R
R/aggregateSoilDepth.R
R/estimateSoilDepth.R
R/evalGenHz.R
R/evalMissingData.R
R/f.noise.R
R/generalize.hz.R
R/get.ml.hz.R
R/getSoilDepthClass.R
R/guessGenHzLevels.R
R/hzTransitionProbabilities.R
R/make.segments.R
R/missingDataGrid.R
R/mostLikelyHzSequence.R
R/munsell2rgb.R
R/panel.depth_function.R
R/plot_distance_graph.R
R/prepanel.depth_function.R
R/profile_compare.R
R/profile_plot.R
R/random_profile.R
R/resample.twotheta.R
R/setters.R
R/sim.R
R/slab.R
R/soilColorSignature.R
R/soil_slotting.R
R/test_hz_logic.R
R/texture-low-rv-high.R
R/unroll.R
R/zzz.R
TODO
data
data/amarillo.rda
data/ca630.rda
data/munsell.rda
data/rruff.sample.rda
data/sp1.rda
data/sp2.rda
data/sp3.rda
data/sp4.rda
data/sp5.rda
demo
demo/00Index
demo/aqp.R
demo/slope_effect_hz_thickness.R
inst
inst/CITATION
man
man/SPC-plotting.Rd
man/SPC-slab-methods.Rd
man/SPC-slice-methods.Rd
man/SPC-unique-methods.Rd
man/SPC-utils.Rd
man/SoilProfileCollection-class.Rd
man/addBracket.Rd
man/addVolumeFraction.Rd
man/aggregateColor.Rd
man/aggregateSoilDepth.Rd
man/amarillo.Rd
man/aqp-package.Rd
man/ca630.Rd
man/estimateSoilDepth.Rd
man/evalGenHZ.Rd
man/evalMissingData.Rd
man/f.noise.Rd
man/generalize.hz.Rd
man/get.ml.hz.Rd
man/getSoilDepthClass.Rd
man/groupedProfilePlot.Rd
man/guessGenHzLevels.Rd
man/hzDistinctnessCodeToOffset.Rd
man/hzTransitionProbabilities.Rd
man/missingDataGrid.Rd
man/munsell.Rd
man/munsell2rgb.Rd
man/panel.depth_function.Rd
man/plotMultipleSPC.Rd
man/plot_distance_graph.Rd
man/profileApply-methods.Rd
man/profileGroupLabels.Rd
man/profile_compare-methods.Rd
man/random_profile.Rd
man/resample.twotheta.Rd
man/rruff.sample.Rd
man/sim.Rd
man/soilColorSignature.Rd
man/sp1.Rd
man/sp2.Rd
man/sp3.Rd
man/sp4.Rd
man/sp5.Rd
man/subsetProfiles-methods.Rd
man/test_hz_logic.Rd
man/texture.triangle.low.rv.high.Rd
man/unroll.Rd
aqp documentation built on May 21, 2017, 12:43 a.m.

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