aqp: Algorithms for Quantitative Pedology

A collection of algorithms related to modeling of soil resources, soil classification, soil profile aggregation, and visualization.

Author
Dylan Beaudette <debeaudette@ucdavis.edu>, Pierre Roudier <roudierp@landcareresearch.co.nz>
Date of publication
2016-03-22 16:04:47
Maintainer
Dylan Beaudette <debeaudette@ucdavis.edu>
License
GPL (>= 2)
Version
1.9.9
URLs

View on R-Forge

Man pages

addBracket
Add Depth Brackets
addVolumeFraction
Symbolize Volume Fraction on a Soil Profile Collection Plot
aggregateColor
Summarize Soil Colors
aggregateSoilDepth
Probabalistic Estimation of Soil Depth
amarillo
Amarillo Soils
aqp-package
Algorithms for Quantitative Pedology
ca630
Soil Data from the Central Sierra Nevada Region of California
estimateSoilDepth
Estimate Soil Depth
evalGenHZ
Evaluate Generalized Horizon Labels
evalMissingData
Evaluate Missing Data
f.noise
Example Objective Function for Full-Pattern Matching
generalize.hz
Generalize Horizon Names
get.ml.hz
Determine ML Horizon Boundaries
getSoilDepthClass
Generate Soil Depth Class Matrix
groupedProfilePlot
Grouped Soil Profile Plot
guessGenHzLevels
Guess Appropriate Ordering for Generalized Horizon Labels
hzDistinctnessCodeToOffset
Convert Horizon Distinctness Codes
hzTransitionProbabilities
Horizon Transition Probabilities
missingDataGrid
Missing Data Grid
munsell
Munsell-RGB Lookup Table for Common Soil Colors
munsell2rgb
Convert Munsell Notation to and from RGB color coordinates
panel.depth_function
Lattice Panel Function for Soil Profiles
plot_distance_graph
Between Individual Distance Plot
plotMultipleSPC
Plot Multiple SoilProfileCollection Objects
profileApply-methods
Apply a function to soil profiles within a...
profile_compare-methods
Numerical Soil Profile Comparison
profileGroupLabels
Soil Profile Group Labels
random_profile
Random Profile
resample.twotheta
Resample an XRD Pattern
rruff.sample
Sample XRD Patterns
sim
Simulate Soil Profiles
soilColorSignature
Soil Profile Color Signatures
SoilProfileCollection-class
SoilProfileCollection Class
sp1
Soil Profile Data Example 1
sp2
Honcut Creek Soil Profile Data
sp3
Soil Profile Data Example 3
sp4
Soil Chemical Data from Serpentinitic Soils of California
sp5
Sample Soil Database #5
SPC-plotting
Profile Plot
SPC-slab-methods
Slab-Wise Aggregation of SoilProfileCollection Objects
SPC-slice-methods
Slicing of SoilProfilecollection Objects
SPC-unique-methods
Get Indices to Unique Soil Profiles Within a Collection
SPC-utils
Getters, Setters, and Utility Methods for...
subsetProfiles-methods
Subset SoilProfileCollection Objects.
test_hz_logic
Test Horizon Logic
texture.triangle.low.rv.high
Soil Texture Low-RV-High as Defined by Quantiles
unroll
Unroll Genetic Horizons

Files in this package

aqp/.Rinstignore
aqp/DESCRIPTION
aqp/NAMESPACE
aqp/NEWS
aqp/R
aqp/R/AAAA.R
aqp/R/Class-SoilProfileCollection.R
aqp/R/SoilProfileCollection-coercion.R
aqp/R/SoilProfileCollection-iterators.R
aqp/R/SoilProfileCollection-methods.R
aqp/R/SoilProfileCollection-slice-methods.R
aqp/R/SoilProfileCollection-spatial.R
aqp/R/addVolumeFraction.R
aqp/R/aggregateColor.R
aqp/R/aggregateSoilDepth.R
aqp/R/estimateSoilDepth.R
aqp/R/evalGenHz.R
aqp/R/evalMissingData.R
aqp/R/f.noise.R
aqp/R/generalize.hz.R
aqp/R/get.ml.hz.R
aqp/R/getSoilDepthClass.R
aqp/R/guessGenHzLevels.R
aqp/R/hzTransitionProbabilities.R
aqp/R/make.segments.R
aqp/R/missingDataGrid.R
aqp/R/mostLikelyHzSequence.R
aqp/R/munsell2rgb.R
aqp/R/panel.depth_function.R
aqp/R/plot_distance_graph.R
aqp/R/prepanel.depth_function.R
aqp/R/profile_compare.R
aqp/R/profile_plot.R
aqp/R/random_profile.R
aqp/R/resample.twotheta.R
aqp/R/setters.R
aqp/R/sim.R
aqp/R/slab.R
aqp/R/soilColorSignature.R
aqp/R/soil_slotting.R
aqp/R/test_hz_logic.R
aqp/R/texture-low-rv-high.R
aqp/R/unroll.R
aqp/R/zzz.R
aqp/TODO
aqp/data
aqp/data/amarillo.rda
aqp/data/ca630.rda
aqp/data/munsell.rda
aqp/data/rruff.sample.rda
aqp/data/sp1.rda
aqp/data/sp2.rda
aqp/data/sp3.rda
aqp/data/sp4.rda
aqp/data/sp5.rda
aqp/demo
aqp/demo/00Index
aqp/demo/aqp.R
aqp/demo/slope_effect_hz_thickness.R
aqp/inst
aqp/inst/CITATION
aqp/man
aqp/man/SPC-plotting.Rd
aqp/man/SPC-slab-methods.Rd
aqp/man/SPC-slice-methods.Rd
aqp/man/SPC-unique-methods.Rd
aqp/man/SPC-utils.Rd
aqp/man/SoilProfileCollection-class.Rd
aqp/man/addBracket.Rd
aqp/man/addVolumeFraction.Rd
aqp/man/aggregateColor.Rd
aqp/man/aggregateSoilDepth.Rd
aqp/man/amarillo.Rd
aqp/man/aqp-package.Rd
aqp/man/ca630.Rd
aqp/man/estimateSoilDepth.Rd
aqp/man/evalGenHZ.Rd
aqp/man/evalMissingData.Rd
aqp/man/f.noise.Rd
aqp/man/generalize.hz.Rd
aqp/man/get.ml.hz.Rd
aqp/man/getSoilDepthClass.Rd
aqp/man/groupedProfilePlot.Rd
aqp/man/guessGenHzLevels.Rd
aqp/man/hzDistinctnessCodeToOffset.Rd
aqp/man/hzTransitionProbabilities.Rd
aqp/man/missingDataGrid.Rd
aqp/man/munsell.Rd
aqp/man/munsell2rgb.Rd
aqp/man/panel.depth_function.Rd
aqp/man/plotMultipleSPC.Rd
aqp/man/plot_distance_graph.Rd
aqp/man/profileApply-methods.Rd
aqp/man/profileGroupLabels.Rd
aqp/man/profile_compare-methods.Rd
aqp/man/random_profile.Rd
aqp/man/resample.twotheta.Rd
aqp/man/rruff.sample.Rd
aqp/man/sim.Rd
aqp/man/soilColorSignature.Rd
aqp/man/sp1.Rd
aqp/man/sp2.Rd
aqp/man/sp3.Rd
aqp/man/sp4.Rd
aqp/man/sp5.Rd
aqp/man/subsetProfiles-methods.Rd
aqp/man/test_hz_logic.Rd
aqp/man/texture.triangle.low.rv.high.Rd
aqp/man/unroll.Rd