Description Usage Arguments Details Value Methods Author(s) Examples
This function returns a set of indices to a subset of profiles within a SoilProfileCollection
object that are uniquely defined by a named set of horizon and site level attributes.
1 | uniqueSPC(x, vars)
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x |
a SoilProfileCollection |
vars |
a character vector naming those horizon and site level attributes that will be used to test for duplication |
Duplicates are identified via MD5 hash of select horizon and site level attributes.
A vector of integer indices that can be used to subset unique profiles from the original SoilProfileCollection
object.
signature(x = "SoilProfileCollection")
D.E. Beaudette
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | ## use the digest library to detect duplicate data
data(sp1)
# make a copy, make new IDs, and stack
s.1 <- sp1
s.2 <- sp1
s.2$id <- paste(s.2$id, '-copy', sep='')
s <- rbind(s.1, s.2)
depths(s) <- id ~ top + bottom
# digests are computed from horizon-level data only
# horizon boundaries and 'prop'
# result is an index of unqique profiles
u <- unique(s, vars=c('top', 'bottom', 'prop'))
# compare with and without dupes:
# note subsetting of SoilProfileCollection
cbind(dupes=length(s), no.dupes=length(s[u, ]))
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