batman-package: Bayesian AuTomated Metabolite Analyser for NMR spectra...
In batman: Bayesian AuTomated Metabolite Analyser for NMR spectra
Description
Details
Author(s)
References
Description
BATMAN deconvolves resonance peaks from NMR spectra of complex mixtures and obtains
concentration estimates for the corresponding metabolites automatically.
This is achieved through a database of spectral profiles for known metabolites and
a Bayesian Markov Chain Monte Carlo algorithm. Users have the options to
specify the multiplet ppm position, position shift range, peak width range and so on.
Parallel processing is available if processing several spectra.
The installation and testing instructions can be found at:
https://r-forge.r-project.org/scm/viewvc.php/documentation
Details
Package: batman
Type: Package
Version: 1.2.1.03
Date: 2014-10-24
License: GPL-2
LazyLoad: yes
Author(s)
Jie Hao <j.hao@ic.ac.uk>, William Astle <william.astle@mail.mcgill.ca>,
Maria De Iorio <m.deiorio@ucl.ac.uk>, Timothy Ebbels <t.ebbels@ic.ac.uk>
References
Hao, J., et al., BATMAN–an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model. Bioinformatics, 2012. 28(15): p. 2088-90.
http://bioinformatics.oxfordjournals.org/content/28/15/2088
Astle, W., et al., A Bayesian Model of NMR Spectra for the Deconvolution and Quantification of Metabolites in Complex Biological Mixtures. Journal of the American Statistical Association, 2012. 107(500): p. 1259-1271.
http://www.tandfonline.com/doi/abs/10.1080/01621459.2012.695661#.UgEf-hbZa4k
batman documentation built on May 2, 2019, 6:13 p.m.
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Description Details Author(s) References
Description
BATMAN deconvolves resonance peaks from NMR spectra of complex mixtures and obtains concentration estimates for the corresponding metabolites automatically. This is achieved through a database of spectral profiles for known metabolites and a Bayesian Markov Chain Monte Carlo algorithm. Users have the options to specify the multiplet ppm position, position shift range, peak width range and so on. Parallel processing is available if processing several spectra. The installation and testing instructions can be found at:
https://r-forge.r-project.org/scm/viewvc.php/documentation
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Details
| Package: | batman |
| Type: | Package |
| Version: | 1.2.1.03 |
| Date: | 2014-10-24 |
| License: | GPL-2 |
| LazyLoad: | yes |
Author(s)
Jie Hao <j.hao@ic.ac.uk>, William Astle <william.astle@mail.mcgill.ca>, Maria De Iorio <m.deiorio@ucl.ac.uk>, Timothy Ebbels <t.ebbels@ic.ac.uk>
References
Hao, J., et al., BATMAN–an R package for the automated quantification of metabolites from nuclear magnetic resonance spectra using a Bayesian model. Bioinformatics, 2012. 28(15): p. 2088-90.
http://bioinformatics.oxfordjournals.org/content/28/15/2088
Astle, W., et al., A Bayesian Model of NMR Spectra for the Deconvolution and Quantification of Metabolites in Complex Biological Mixtures. Journal of the American Statistical Association, 2012. 107(500): p. 1259-1271.
http://www.tandfonline.com/doi/abs/10.1080/01621459.2012.695661#.UgEf-hbZa4k
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