readBatmanOutput: Reads in BATMAN Output Data Files
In batman: Bayesian AuTomated Metabolite Analyser for NMR spectra

Description Usage Arguments Value See Also Examples

Reads in output data files from batman in specified folder.

1 2	readBatmanOutput(dirOP, dirIP,readMetaIndFitSam = TRUE, readMetaTempHR = TRUE, readMetaTemp = TRUE)

`dirOP`	The folder with `batman` output files.
`dirIP`	The folder with `batman` input files.
`readMetaIndFitSam`	If set `TRUE`, read in the posterior samples of individual metabolites fit.
`readMetaTempHR`	If set `TRUE`, read in the posterior means of fitted metabolite templates (without down sample).
`readMetaTemp`	If set `TRUE`, read in the posterior means of fitted metabolite templates (down sampled).

It returns a data list with the objects described in batman.

batman, batmanrerun

library(batman)
## Run BATMAN 
if(interactive()) 
{
bm<-batman()
## Read in output files in saved directory.
bmread<-readBatmanOutput(bm$outputDir,bm$inputDir)
}