Description Usage Arguments Examples
Generation of grid for MOPAC molecular co-fields
1 2 3 4 5 6 7 | cmf_gen_grid_mopac (
train_fname = "ligands-train.mol2",
train_mopac_res_fname = "ligands-mopac-res-train.RData",
kernels_fname = "ligands-kernels.RData",
grid_fname = "ligands-grid-krr.RData",
verbose = TRUE
)
|
train_fname |
"ligands-train.mol2" |
train_mopac_res_fname |
"ligands-mopac-res-train.RData" |
kernels_fname |
ligands-kernels.RData" |
grid_fname |
"ligands-grid-krr.RData" |
verbose |
TRUE |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
cmf_gen_grid_mopac <- function
(
train_fname = "ligands-train.mol2", # training set file name
train_mopac_res_fname = "ligands-mopac-res-train.RData", # File with MOPAC results for the training set
kernels_fname = "ligands-kernels.RData", # Computed kernels file name
model_fname = "ligands-model.RData", # Model file name
grid_fname = "ligands-grid-krr.RData", # Grid with regression coefficients - file name
verbose = TRUE, # Verbose output
...
)
{
}
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.