cmf_krr_ecvr: External n-fold cross-validation with reshuffings

Description Usage Arguments Examples

Description

External n-fold cross-validation with reshuffings

Usage

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cmf_krr_ecvr(act_all_fname = "activity-all.txt", act_colnum = 2, sep = ",", kernels_all_fname = "ligands-kernels-all.RData", ecvr_fname = "ligands-ecvr.RData", ...)

Arguments

act_all_fname
act_colnum
sep
kernels_all_fname
ecvr_fname
...

Examples

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##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (act_all_fname = "activity-all.txt", act_colnum = 2, 
    sep = ",", kernels_all_fname = "ligands-kernels-all.RData", 
    ecvr_fname = "ligands-ecvr.RData", ...) 
{
    act <- read.table(act_all_fname, header = TRUE, sep = sep)
    y <- act[, act_colnum]
    load(kernels_all_fname)
    ecvr <- cmf_krr_ecvr_mem(y = y, kernels = kernels, ...)
    save(ecvr, file = ecvr_fname)
    ecvr
  }

conmolfields documentation built on May 2, 2019, 4:18 p.m.