API for dcGOR
Analysis of Ontologies and Protein Domain Annotations
| Global functions | |
|---|---|
| .selectSomeIndex | Source code |
| .showInfoDataFrame | Source code |
| .wrapcat | Source code |
| AdjData | Man page |
| AdjData-class | Man page |
| Ancestral_domainome | Man page |
| Anno | Man page |
| Anno-class | Man page |
| Anno-method | Man page |
| AnnoData | Man page |
| AnnoData-class | Man page |
| Cnetwork | Man page |
| Cnetwork-class | Man page |
| Cnetwork-method | Man page |
| Coutput | Man page |
| Coutput-class | Man page |
| Coutput-method | Man page |
| Data | Man page |
| Data,InfoDataFrame-method | Man page |
| Dnetwork | Man page |
| Dnetwork-class | Man page |
| Dnetwork-method | Man page |
| Eoutput | Man page |
| Eoutput-class | Man page |
| Eoutput-method | Man page |
| InfoDataFrame | Man page |
| InfoDataFrame-class | Man page |
| InfoDataFrame-method | Man page |
| InterPro | Man page |
| InterPro2GOBP | Man page |
| InterPro2GOCC | Man page |
| InterPro2GOMF | Man page |
| Onto | Man page |
| Onto-class | Man page |
| Onto-method | Man page |
| Pfam | Man page |
| Pfam2GOBP | Man page |
| Pfam2GOCC | Man page |
| Pfam2GOMF | Man page |
| Rfam | Man page |
| Rfam2GOBP | Man page |
| Rfam2GOCC | Man page |
| Rfam2GOMF | Man page |
| SCOP.fa | Man page |
| SCOP.fa2DO | Man page |
| SCOP.fa2GOBP | Man page |
| SCOP.fa2GOCC | Man page |
| SCOP.fa2GOMF | Man page |
| SCOP.fa2HPMI | Man page |
| SCOP.fa2HPON | Man page |
| SCOP.fa2HPPA | Man page |
| SCOP.fa2MP | Man page |
| SCOP.sf | Man page |
| SCOP.sf2DO | Man page |
| SCOP.sf2GOBP | Man page |
| SCOP.sf2GOCC | Man page |
| SCOP.sf2GOMF | Man page |
| SCOP.sf2HPMI | Man page |
| SCOP.sf2HPON | Man page |
| SCOP.sf2HPPA | Man page |
| SCOP.sf2MP | Man page |
| [,Anno,ANY,ANY,ANY-method | Man page |
| [,Anno-method | Man page |
| [,Cnetwork,ANY,ANY,ANY-method | Man page |
| [,Cnetwork-method | Man page |
| [,Dnetwork,ANY,ANY,ANY-method | Man page |
| [,Dnetwork-method | Man page |
| [,InfoDataFrame,ANY,ANY,ANY-method | Man page |
| [,InfoDataFrame-method | Man page |
| [,Onto,ANY,ANY,ANY-method | Man page |
| [,Onto-method | Man page |
| adjMatrix | Man page |
| adjMatrix,Cnetwork-method | Man page |
| adjMatrix,Dnetwork-method | Man page |
| adjMatrix,Onto-method | Man page |
| adjp | Man page |
| adjp,Coutput-method | Man page |
| adjp,Eoutput-method | Man page |
| annoData | Man page |
| annoData,Anno-method | Man page |
| cnetwork | Man page |
| cnetwork,Coutput-method | Man page |
| colNames | Man page |
| colNames,InfoDataFrame-method | Man page |
| dData | Man page |
| dData,Anno-method | Man page |
| data.frame2InfoDataFrame | Man page |
| dcAlgo | Man page Source code |
| dcAlgoPredict | Man page Source code |
| dcAlgoPredictGenome | Man page Source code |
| dcAlgoPredictMain | Man page Source code |
| dcAlgoPredictPR | Man page Source code |
| dcAlgoPropagate | Man page Source code |
| dcAncestralML | Man page Source code |
| dcAncestralMP | Man page Source code |
| dcBuildAnno | Man page Source code |
| dcBuildInfoDataFrame | Man page Source code |
| dcBuildOnto | Man page Source code |
| dcConverter | Man page |
| dcDAGannotate | Man page |
| dcDAGdomainSim | Man page |
| dcDuplicated | Man page Source code |
| dcEnrichment | Man page Source code |
| dcFunArgs | Man page Source code |
| dcList2Matrix | Man page Source code |
| dcNaivePredict | Man page Source code |
| dcRDataLoader | Man page Source code |
| dcRWRpipeline | Man page Source code |
| dcRWRpredict | Man page Source code |
| dcSparseMatrix | Man page Source code |
| dcSplitArch | Man page Source code |
| dcSubtreeClade | Man page Source code |
| dcSubtreeTips | Man page Source code |
| dcSupraBetter | Man page Source code |
| dcTreeConnectivity | Man page Source code |
| description | Man page |
| description,Dnetwork-method | Man page |
| dgCMatrix2Anno | Man page |
| dgCMatrix2Cnetwork | Man page |
| dgCMatrix2Dnetwork | Man page |
| dgCMatrix2Onto | Man page |
| dim,Anno-method | Man page |
| dim,Cnetwork-method | Man page |
| dim,Dnetwork-method | Man page |
| dim,InfoDataFrame-method | Man page |
| dim,Onto-method | Man page |
| dimLabels | Man page |
| dimLabels,InfoDataFrame-method | Man page |
| domainData | Man page |
| domainData,Anno-method | Man page |
| domainNames | Man page |
| domainNames,Anno-method | Man page |
| eTOL | Man page |
| id | Man page |
| id,Dnetwork-method | Man page |
| level | Man page |
| level,Dnetwork-method | Man page |
| matrix2Anno | Man page |
| matrix2Cnetwork | Man page |
| matrix2Dnetwork | Man page |
| matrix2Onto | Man page |
| nInfo | Man page |
| nInfo,Cnetwork-method | Man page |
| nInfo,Dnetwork-method | Man page |
| nInfo,Onto-method | Man page |
| ncol | Man page |
| ncol,InfoDataFrame-method | Man page |
| nodeInfo | Man page |
| nodeInfo,Cnetwork-method | Man page |
| nodeInfo,Dnetwork-method | Man page |
| nodeInfo,Onto-method | Man page |
| nodeNames | Man page |
| nodeNames,Cnetwork-method | Man page |
| nodeNames,Dnetwork-method | Man page |
| nodeNames,Onto-method | Man page |
| nrow | Man page |
| nrow,InfoDataFrame-method | Man page |
| onto.DO | Man page |
| onto.GOBP | Man page |
| onto.GOCC | Man page |
| onto.GOMF | Man page |
| onto.HPMI | Man page |
| onto.HPON | Man page |
| onto.HPPA | Man page |
| onto.MP | Man page |
| pvalue | Man page |
| pvalue,Coutput-method | Man page |
| pvalue,Eoutput-method | Man page |
| ratio | Man page |
| ratio,Coutput-method | Man page |
| rowNames | Man page |
| rowNames,InfoDataFrame-method | Man page |
| show,Anno-method | Man page |
| show,Cnetwork-method | Man page |
| show,Coutput-method | Man page |
| show,Dnetwork-method | Man page |
| show,Eoutput-method | Man page |
| show,InfoDataFrame-method | Man page |
| show,Onto-method | Man page |
| tData | Man page |
| tData,Anno-method | Man page |
| termData | Man page |
| termData,Anno-method | Man page |
| termNames | Man page |
| termNames,Anno-method | Man page |
| term_distance | Man page |
| term_distance,Onto-method | Man page |
| term_id | Man page |
| term_id,Onto-method | Man page |
| term_name | Man page |
| term_name,Onto-method | Man page |
| term_namespace | Man page |
| term_namespace,Onto-method | Man page |
| view | Man page |
| view,Eoutput-method | Man page |
| visEnrichment | Man page |
| write | Man page |
| write,Coutput-method | Man page |
| write,Eoutput-method | Man page |
| zscore | Man page |
| zscore,Coutput-method | Man page |
| zscore,Eoutput-method | Man page |
