dcemriS4: A Package for Medical Image Analysis (S4 implementation)

A collection of routines and documentation that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced or diffusion-weighted MRI data.

Author
Brandon Whitcher and Volker Schmid, with contributions from Andrew Thornton
Date of publication
2012-01-02 15:47:45
Maintainer
Brandon Whitcher <bjw34032@users.sourceforge.net>
License
BSD
Version
0.46
URLs

View on R-Forge

Man pages

aif
Arterial Input Functions
aifParameters
Parameters for Arterial Input Functions
buckley
Simulated Data from Buckley (2002)
compartmentalModel
Compartmental Models for Kinetic Parameter Estimation
conv_fft
Convolution of 3D Arrays using the Fourier Transform
cpmg
Quantitative T2
dam
Double-Angle Method for B1+ Mapping
dce_bayes
Bayesian Methods for Pharmacokinetic Modeling of Dynamic...
dce_map
Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI...
dcemri
Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemriS4-package
dcemri: A Package for Medical Image Analysis (S4...
dce_spline
Bayesian P-Splines for Dynamic Contrast-Enhanced MRI Data
dwi
Estimate the Apparent Diffusion Coefficient (ADC)
expConv
Convolution
extract
Seed Growing for a 4D Array
find_center
Find the Center of a Binary Mask
flipangle
Estimate Intrinsic Tissue Relaxivity
ftm
Fast Template Matching via Cross-Correlation
kineticmodel
Pharmacokinetic Models
rcbv
Regional Cerebral Blood Volume
shift3D
Shift a 3D Array in One Dimension

Files in this package

dcemriS4
dcemriS4/NAMESPACE
dcemriS4/inst
dcemriS4/inst/doc
dcemriS4/inst/doc/dcemriS4.pdf
dcemriS4/inst/doc/dcemriS4.Rnw
dcemriS4/inst/CITATION
dcemriS4/inst/nifti
dcemriS4/inst/nifti/SDAM_smooth.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-25deg.nii.gz
dcemriS4/inst/nifti/SDAM_ep2d_120deg_26slc.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-10deg.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-20deg.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-5deg.nii.gz
dcemriS4/inst/nifti/t1_phantom_mask.nii.gz
dcemriS4/inst/nifti/SDAM_ep2d_60deg_26slc.nii.gz
dcemriS4/inst/nifti/fl3d_vibe-15deg.nii.gz
dcemriS4/COPYING
dcemriS4/man
dcemriS4/man/aif.Rd
dcemriS4/man/kineticmodel.Rd
dcemriS4/man/compartmentalModel.Rd
dcemriS4/man/dam.Rd
dcemriS4/man/expConv.Rd
dcemriS4/man/ftm.Rd
dcemriS4/man/dce_bayes.Rd
dcemriS4/man/extract.Rd
dcemriS4/man/dcemriS4-package.Rd
dcemriS4/man/buckley.Rd
dcemriS4/man/dce_spline.Rd
dcemriS4/man/dce_map.Rd
dcemriS4/man/flipangle.Rd
dcemriS4/man/conv_fft.Rd
dcemriS4/man/cpmg.Rd
dcemriS4/man/shift3D.Rd
dcemriS4/man/dwi.Rd
dcemriS4/man/aifParameters.Rd
dcemriS4/man/rcbv.Rd
dcemriS4/man/dcemri.Rd
dcemriS4/man/find_center.Rd
dcemriS4/DESCRIPTION
dcemriS4/data
dcemriS4/data/buckley.txt.gz
dcemriS4/data/buckley.rda
dcemriS4/src
dcemriS4/src/zufall.h
dcemriS4/src/zufall.c
dcemriS4/src/baymri.c
dcemriS4/src/dcesp.c
dcemriS4/src/fortran.f
dcemriS4/src/dtrsv.f
dcemriS4/tests
dcemriS4/tests/Examples
dcemriS4/tests/Examples/dcemriS4-Ex.Rout.save
dcemriS4/R
dcemriS4/R/cpmg.R
dcemriS4/R/dcemri_spline.R
dcemriS4/R/zzz.R
dcemriS4/R/template_matching.R
dcemriS4/R/dwi.R
dcemriS4/R/kineticmodel.R
dcemriS4/R/forms.R
dcemriS4/R/rcbv.R
dcemriS4/R/dcemri_map.R
dcemriS4/R/model.R
dcemriS4/R/flipangle.R
dcemriS4/R/dcemri_bayes.R
dcemriS4/R/aif.R
dcemriS4/R/dcemri_lm.R
dcemriS4/R/wrappers.R
dcemriS4/vignettes
dcemriS4/vignettes/dcemriS4.bib
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes_cv.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans7.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans.png
dcemriS4/vignettes/281949_19040721_perfusion_ve.png
dcemriS4/vignettes/281949_19040721_axtensor_D.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_bayes_sd.png
dcemriS4/vignettes/281949_19040721_perfusion_kep.png
dcemriS4/vignettes/281949_19040721_perfusion_sse.png
dcemriS4/vignettes/281949_19040721_perfusion_vp.png
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_map.png
dcemriS4/vignettes/281949_19040721_perfusion_Fp_spline.png
dcemriS4/vignettes/dcemriS4.Rnw
dcemriS4/vignettes/281949_19040721_perfusion_ktrans_spline.png