dcemriS4: A Package for Medical Image Analysis (S4 implementation)
Version 0.46

A collection of routines and documentation that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced or diffusion-weighted MRI data.

AuthorBrandon Whitcher and Volker Schmid, with contributions from Andrew Thornton
Date of publication2012-01-02 15:47:45
MaintainerBrandon Whitcher <bjw34032@users.sourceforge.net>
LicenseBSD
Version0.46
URL http://www.dcemri.org/ http://dcemri.sourceforge.net/ http://dcemri.blogspot.com/
Package repositoryView on R-Forge
InstallationInstall the latest version of this package by entering the following in R:
install.packages("dcemriS4", repos="http://R-Forge.R-project.org")

Getting started

Package overview

Popular man pages

conv_fft: Convolution of 3D Arrays using the Fourier Transform
dam: Double-Angle Method for B1+ Mapping
dce_map: Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI...
dcemri: Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemriS4-package: dcemri: A Package for Medical Image Analysis (S4...
expConv: Convolution
ftm: Fast Template Matching via Cross-Correlation
See all...

All man pages Function index File listing

Man pages

aif: Arterial Input Functions
aifParameters: Parameters for Arterial Input Functions
buckley: Simulated Data from Buckley (2002)
compartmentalModel: Compartmental Models for Kinetic Parameter Estimation
conv_fft: Convolution of 3D Arrays using the Fourier Transform
cpmg: Quantitative T2
dam: Double-Angle Method for B1+ Mapping
dce_bayes: Bayesian Methods for Pharmacokinetic Modeling of Dynamic...
dce_map: Pharmacokinetic Modeling of Dynamic Contrast-Enhanced MRI...
dcemri: Pharmacokinetic Models for Dynamic Contrast-Enhanced MRI Data
dcemriS4-package: dcemri: A Package for Medical Image Analysis (S4...
dce_spline: Bayesian P-Splines for Dynamic Contrast-Enhanced MRI Data
dwi: Estimate the Apparent Diffusion Coefficient (ADC)
expConv: Convolution
extract: Seed Growing for a 4D Array
find_center: Find the Center of a Binary Mask
flipangle: Estimate Intrinsic Tissue Relaxivity
ftm: Fast Template Matching via Cross-Correlation
kineticmodel: Pharmacokinetic Models
rcbv: Regional Cerebral Blood Volume
shift3D: Shift a 3D Array in One Dimension

Functions

Files

NAMESPACE
inst
inst/doc
inst/doc/dcemriS4.pdf
inst/doc/dcemriS4.Rnw
inst/CITATION
inst/nifti
inst/nifti/SDAM_smooth.nii.gz
inst/nifti/fl3d_vibe-25deg.nii.gz
inst/nifti/SDAM_ep2d_120deg_26slc.nii.gz
inst/nifti/fl3d_vibe-10deg.nii.gz
inst/nifti/fl3d_vibe-20deg.nii.gz
inst/nifti/fl3d_vibe-5deg.nii.gz
inst/nifti/t1_phantom_mask.nii.gz
inst/nifti/SDAM_ep2d_60deg_26slc.nii.gz
inst/nifti/fl3d_vibe-15deg.nii.gz
COPYING
man
man/aif.Rd
man/kineticmodel.Rd
man/compartmentalModel.Rd
man/dam.Rd
man/expConv.Rd
man/ftm.Rd
man/dce_bayes.Rd
man/extract.Rd
man/dcemriS4-package.Rd
man/buckley.Rd
man/dce_spline.Rd
man/dce_map.Rd
man/flipangle.Rd
man/conv_fft.Rd
man/cpmg.Rd
man/shift3D.Rd
man/dwi.Rd
man/aifParameters.Rd
man/rcbv.Rd
man/dcemri.Rd
man/find_center.Rd
DESCRIPTION
data
data/buckley.txt.gz
data/buckley.rda
src
src/zufall.h
src/zufall.c
src/baymri.c
src/dcesp.c
src/fortran.f
src/dtrsv.f
tests
tests/Examples
tests/Examples/dcemriS4-Ex.Rout.save
R
R/cpmg.R
R/dcemri_spline.R
R/zzz.R
R/template_matching.R
R/dwi.R
R/kineticmodel.R
R/forms.R
R/rcbv.R
R/dcemri_map.R
R/model.R
R/flipangle.R
R/dcemri_bayes.R
R/aif.R
R/dcemri_lm.R
R/wrappers.R
vignettes
vignettes/dcemriS4.bib
vignettes/281949_19040721_perfusion_ktrans_bayes_cv.png
vignettes/281949_19040721_perfusion_ktrans_bayes.png
vignettes/281949_19040721_perfusion_ktrans7.png
vignettes/281949_19040721_perfusion_ktrans.png
vignettes/281949_19040721_perfusion_ve.png
vignettes/281949_19040721_axtensor_D.png
vignettes/281949_19040721_perfusion_ktrans_bayes_sd.png
vignettes/281949_19040721_perfusion_kep.png
vignettes/281949_19040721_perfusion_sse.png
vignettes/281949_19040721_perfusion_vp.png
vignettes/281949_19040721_perfusion_ktrans_map.png
vignettes/281949_19040721_perfusion_Fp_spline.png
vignettes/dcemriS4.Rnw
vignettes/281949_19040721_perfusion_ktrans_spline.png
dcemriS4 documentation built on May 21, 2017, 12:18 a.m.

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