vc.score: Perform Score Test
In fassoc: VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
This function performs marker set based association (score test) based on the variance component model.
Usage
1
Arguments
Tped
Pedigree data matrix. The first six columns are the Family ID (FID), Inidvidual ID (IID),
Paternal ID (FAT), Maternal ID (MAT), Sex (SEX), Phenotype (pheno), respectively.
SNP genotypes (column 7 onwards) are coded 0/1/2 (minor allele count).
n1
Number of nuclear families.
n2
Nunber of unrelated individuals.
app.method
Value
Returns p-value
Author(s)
Xuefeng Wang
See Also
fgls
Examples
1
fassoc documentation built on May 2, 2019, 4:53 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
This function performs marker set based association (score test) based on the variance component model.
Usage
1 |
Arguments
Tped |
Pedigree data matrix. The first six columns are the Family ID (FID), Inidvidual ID (IID), Paternal ID (FAT), Maternal ID (MAT), Sex (SEX), Phenotype (pheno), respectively. SNP genotypes (column 7 onwards) are coded 0/1/2 (minor allele count). |
n1 |
Number of nuclear families. |
n2 |
Nunber of unrelated individuals. |
app.method |
Value
Returns p-value
Author(s)
Xuefeng Wang
See Also
fgls
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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