ConDivSim: Null models for functional-phylogenetic diversity

In funphylocom: Functional traits, phylogenies, communities, simulations

Description

Simulate expectations (under a null model) of mean pairwise distance for a set of communities with different species richness.

Usage

ConDivSim(tab, Dist, Sim, Plot = TRUE, ord = TRUE, disp99 = FALSE)

Arguments

tab	The community by species presence table.
Dist	The distance (functional, phylogenetic, FPDist) on which the mean pairwise distance is based.
Sim	The number of permutations of the presence vector used to make the estimations.
Plot	TRUE or FALSE to make the plot of the expected average mean pairwise distance, and the 5-95% confidence interval.
ord	Order rows and columns of the matrices? (defaults to TRUE). Note that sites are never ordered.
disp99	Display the 99% interval?

Details

If plot == TRUE, then a surface is drawn giving the null distribution. Lighter shades of gray give larger intervals with categories: 0.005-0.995 = 99%, 0.025-0.975 = 95%, 0.05-0.95 = 90%, 0.25-0.75 = 50%.

Value

TODO

funphylocom documentation built on May 2, 2019, 5 p.m.